BAC Information

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BAC

Clone NameMSMg01-237N12
Chromosome16 (Build37)
Map Location 13,753,265 - 13,753,505
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10
Downstream geneA930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N12.T7 (MSMg01no237_n12.b1)MSMg01-237N12.TJ (MSMg01no237_n12.g1)
ACCAG402675AG402676
length737709
length of high quality
(start - end)
241 (128 - 368)326 (14 - 339)
definitionCHROMAT_FILE: MSMg01no237_n12.b1 PHD_FILE: MSMg01no237_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:46 2005CHROMAT_FILE: MSMg01no237_n12.g1 PHD_FILE: MSMg01no237_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAACCAGGACTATACTGTG
AGACCCTGTGTCAAAATGTATGGCCCAAAATAAAAAGACCTGAAGGTGTG
TCCAGGAAGTTGGAAGTGGATATAATCAAGAAATATATGTATAAAATTGT
CAAAGAATAAAAAGTTAATAAAGTATAAAGATAATTAGAGAAAACAATAT
GGCAAATGTTCATAATTATAGAATATAGATGAAATAAGTATAGGTGTTGA
TTATTCAGTTCTTTCCTGTGTTCTTTAGGCTTGACATTTTTCAAAATAGT
TGCAGAATTTTATTTTGTAATTTACACCCTCCCGCTATAAACTTATAAAC
ATGAGTAGCAGGTGGGGATGACGGCTCAATAACTAAAGACTTGACAGCCT
GAGTCCAGTCGCCAGGAGCCACGTGATGGCGAGAGAGAACTGACTTCTGC
ACATTGCTGTCTGACCCCCAGATGAAAAGAAATAAATCTCTCCCCTTTGG
CTGCAGGAGTGTTCAAGGCTGGCAACCAGAATTATCTGCCTAATGATAAA
GGGTGCAACACCATGCCATAGGTAGGCCGCAAGGTGATAAGCTGGAGTTA
TCCTTCGTCAGATCCTTTGAAATTAGCCCAGTTAAGCCCGAGGTAAATCT
CTATACTGGAATTAGGAAGGCTTAATTCTGAATTTTT
CTCACTATAGCGAGAGGATCCGCGGAATTCCACAAAGCTTTCCATAGGAC
TCATCAAGTTAAAGGTCAATATGAACTGTTATGGCTTGAGTTAGAGCTCC
CCACCAGGCAGAAGCTCCTGCGCCTGTATATGAGCTCACTGTGGTTTTGT
GGGTGACACTGAAGAATGCTACTAATAAGCCAAAGAGTTATGATTATAAC
ACCCATGCTCTGTTATCTCAATGTTCAAAACTTCCCCCGTTCACCACCTC
TCTTACCTCACTCAGGACCAATCAGCTTTTTTTTTTTTTAAAGATTTATT
TATTTGTTATATGTAAGTACACTGTAGCTATCTTCTTTTTTTTCCACACC
CACCCACCCCTAGATCTCATTACGGATGGCTGTGAGCCACCATGTGGTTG
CTGGGATTTGAACTCAGAACCTTTGGAAGAGAAGTCGGGTGCTCTTACCT
GCTGAGCCATCTCACCAGCCCCCCCAATCAGCTTTTAAAGGTCAGTTGAT
AATACTCTGTCTAGTAAGCTAAAATGTAATACTGCTCCCCCTTGCCTTTA
AATGTTTGAACCTGGTTTTTCCTATAAAAAGTCTGCTTGCAGGACAGATG
GGTACCACAATTAAGTTATTCTTTTTGTGGTCCTGCTCTGATCACCATCT
GGATGTGCAAACAATAAACCATCCCTGTCTGACTGATCCATACCCGAGTG
CTTTGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n12.b1 MSMg01no237_n12.b1 CHROMAT_FILE:
MSMg01no237_n12.b1 PHD_FILE: MSMg01no237_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:46 2005
         (241 letters)



>mm_chr16_13753065_13753705
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataaaaagacctgaaggtgtgtccaggaagttggaagtggatataatcaagaaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 aaataaaaagacctgaaggtgtgtccaggaagttggaagtggatataatcaagaaatcta 382

                                                                       
Query: 61  tgtataaaattgtcaaagaataaaaagttaataaagtataaagataattagagaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtataaaattgtcaaagaataaaaagttaataaagtataaagataattagagaaaacaa 322

                                                                       
Query: 121 tatggcaaatgttcataattatagaatatagatgaaataagtataggtgttgattattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tatggcaaatgttcataattatagaatatagatgaaataagtataggtgttcattattca 262

                                                                       
Query: 181 gttctttcctgtgttctttaggcttgacatttttcaaaatagttgcagaattttattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctttcctgtgttctttaggcttgacatttttcaaaatagttgcagaattttattttg 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)