Query= MSMg01no261_f20.b1 MSMg01no261_f20.b1 CHROMAT_FILE:
MSMg01no261_f20.b1 PHD_FILE: MSMg01no261_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:44 2005
(683 letters)
>mm_chr16_41123487_41124570
Length = 1084
Score = 1237 bits (640), Expect = 0.0
Identities = 670/681 (98%), Gaps = 3/681 (0%)
Strand = Plus / Plus
Query: 4 gaattccacaaatatctctccaatttatattcaaaacatggatgtaaactaagaagtgtt 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccacaaatatc-ctacaatttatattcaaaacatggatgtaaactaagaagtgtt 262
Query: 64 cattttagtttcttgacttagcaaaacccaattaaatagaacaatttcttctctgtattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cattttagtttcttgacttagcaaaacccaattaaatagaacaatttcttctctgtattc 322
Query: 124 tgagcttctttggagcatgggacaaactgtggattcggagactgatttactccataacct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgagcttctttggagcatgggacaaactgtggattcggagactgatttactccataacct 382
Query: 184 tcttattgtcgctccctgcctgacagcaatgcaggacttaacatcttcagttctgtgaaa 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctcattgtcgctccctgcctgacagcaatgcaggacttaacatcttcagttctgtgaaa 442
Query: 244 atcataa--gagattgtactccagattattcctgccatcctcagaattcttcatcctgct 301
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcataaaagagattgtactccagattattcctgccatcctcagaattcttcatcctgct 502
Query: 302 tacccttctctgatacaaagtttattttctgtatttcaggcatttaacctttacattctt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacccttctctgatacaaagtttattttctgtatttcaggcatttaacctttacattctt 562
Query: 362 ctgcaaggccaattctgtttgtttgcttgttcttttgaggacaaaggagaagccatccct 421
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgcaaggacaattctgtttgtttgcttgttcttttgaggacaaaggagaagccatccct 622
Query: 422 actgaagtggttattcattgatcacttcagtagaaaacccacacaggctgcaaggaagaa 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatgaagtggttattcattgatcacttcagtagaaaacccacacaggctgcaaggaagaa 682
Query: 482 cttaaaggcctacaggggcttgttctctaaccaagtgacttaactctgccagttacttct 541
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttgaaggcatacaggggcttgttctctaaccaagtgacttaactctgccagttacttct 742
Query: 542 gcaaatgactgcctcatcagagtcagaccattttggatatcaaaatgtcatgataatttt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcaaatgactgcctcatcagagtcagaccattttggatatcaaaatgtcatgataatttt 802
Query: 602 tgagttgaaaaactcacaaggattanattcatcaactcgataacccctcctatgacctgg 661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 803 tgagttgaaaaactcacaaggattaaattcatcaactcgataacccctcctatgacctgg 862
Query: 662 catgatcgtacctgggctttg 682
||||||| |||||||||||||
Sbjct: 863 catgatcatacctgggctttg 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_f20.g1 MSMg01no261_f20.g1 CHROMAT_FILE:
MSMg01no261_f20.g1 PHD_FILE: MSMg01no261_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:44 2005
(652 letters)
>mm_chr16_41308282_41309333
Length = 1052
Score = 1222 bits (632), Expect = 0.0
Identities = 647/652 (99%)
Strand = Plus / Minus
Query: 1 agagaacagccagaataaaaacatgattaaagagatagaggcgatgacttatgaaaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 agagaacagccagaataaaaacatgattaaagagatagaggcgatgacttatgaaaaaga 793
Query: 61 tgaaaagggccaaatctgaatagcttggcaatgcagccctttaggtggcatatgataact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tgaaaagggccaaatctgaatagcttggcaatgcagccctttaggtggcatatgataact 733
Query: 121 gtctatcagtgtctgaagaataggagcaagcactgaagaggggaagttttgagaatgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gtctatcagtgtctgaagaataggagcaagcactgaagaggggaagttttgagaatgatg 673
Query: 181 taggaaataagcattgccagggcctgagtttgaaaaaatgggtgtaaagggggagtttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 taggaaataagcattgccagggcctgagtttgaaaaaatgggtgtaaagggggagtttgt 613
Query: 241 tcatcagttcagattctgctgagagacagattgatgttaaaaagtaagacttgcaactat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcatcagttcagattctgctgagagacagattgatgttaaaaagtaagacttgcaactat 553
Query: 301 gcaatcatgagatgagcttgtcatacattgagaaatggtatgtgaaggaataaattactc 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcaatcatgagatgggcttgtcatacattgagaaatggtatgtgaaggaataaattactc 493
Query: 361 tatgtgtatgtgtcaaatgtaagtcaatattttcagctcaacaaatgtacatgatcatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatgtgtatgtgtcaaatgtaagtcaatattttcagctcaacaaatgtacatgatcatca 433
Query: 421 aattattaaaatgatcttgtgccattcttggttccttttaaataggtttaccagaagata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aattattaaaatgatcttgtgccattcttggttccttttaaataggtttaccagaagata 373
Query: 481 aatctaaatagctgaggcaaacaaagaagctacaaaaaaaatccctcactctgattttta 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatctaaatagctgaggcaaacagagaagctacaaaaaaaatccctcactctgattttta 313
Query: 541 ccttcttattcttataataatcaatactccaagactacatggagttttagattccatgga 600
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 312 ccttcttattcttataataatcaatactccaggacttcatggagttttagattccatgga 253
Query: 601 ccatagcagtaaagcacattcttctgatgtaagcaagtttatgttttctttc 652
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 ccatagcagtaaagcacattcttctgatgtaagcaaggttatgttttctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
