BAC Information

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BAC

Clone NameMSMg01-261N07
Chromosome16 (Build37)
Map Location 68,811,074 - 68,811,419
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261N07.T7 (MSMg01no261_n07.b1)MSMg01-261N07.TJ (MSMg01no261_n07.g1)
ACCAG404101AG404102
length739761
length of high quality
(start - end)
341 (76 - 416)346 (73 - 418)
definitionCHROMAT_FILE: MSMg01no261_n07.b1 PHD_FILE: MSMg01no261_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:18 2005CHROMAT_FILE: MSMg01no261_n07.g1 PHD_FILE: MSMg01no261_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAATCCGC
GGAATTCTCTGGTGTTTACTTTTAGGGTCACTTATATATACTATCATATC
ATCTGCAAAAAGTGATATTTTGACTTCATCTTTTCCAATTTGTATCCCCT
TGATCTCCTTTGGTTGTCGAATTGCCCTGGCTAATACTTCAAGTACTATG
TTGAAGAGGTAGCGAAAAAGTGGGCAGCCTTGTCTTGTCCCTGATTTTAG
TGTGATTGCTTCAAGCTTCTCACAATTTATTTTGATGTTGGCTACTGGTT
TGCTGTAGATTGCTTTTATCATGTTTAGGTACGGGCCTTGAATTCCTGAT
CTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTTGTCTAATGCTTT
TTCTGCATCTAACGAGATGATCATGCGTTTTCTATCTTTGAGTTTGTTCA
TATAATGGATTACATTGATGGATTTTCATATATTAAACCATCCCTGTATC
CCAGGAATAAAACCTACTTGCTCAGGATGGATGATTGCTTTAATGGTTTC
TTGGATTCGCTTCTCGAGAATTTTATTGAGGATTTTTTGAATCGATATTT
AAAACCGTAAACTTGGTCTGAAGTTCTTGTTTATTTGCTTGAAACCTTTT
TGTGGCTATTGTTTCACCAGTTATTCTCGGCTTTCATTATAAATGATTTT
GCGTCAAATGTTCCCCCCCTAACCCTTATTTTTTGTCGG
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTCAAAGTCACTAAGGTCTCACCATT
GTCCTTCTGTTCTGTGATAAAATGTTCTGCTGTGAGTTAGGAAATTGCAC
TAGTCATCAACTCATCACTCTTAAAACATTTTCTCATGTTTTTGACTTAA
CTTAATTTCCTTTGTAAAATCATGTGCTACCAATAAGATATCATAATATA
AATTGACATTTGACGAAGTTGCCTTTGTACATTGGGTAAACATTTAATCT
TCCTTTCCTAAAGATTCCTGAGCATCCTTAAAGGGCTCAACAAGTATTCT
GTAAACTTTCATACCAGATTATCTCCAATATTTGCTAGACATGAATCTTA
ACTTGGCAACTTAAATCACAAGAAAGTACACAAATACTTTAAAAACACTG
GTTAATCACATACAATTCATATTAGATTTATGTAATTCGAGAGTGACTCT
AGACCTATAAACAAGGAAAGAAAGAGTAAACTCCTTTTTCAACAGTGATA
AAATTAGACTGAACACCAACAGCACCTGCGTTCCAGTTGAATAACTTCAT
GCTAAATGTTAAAATTACTTTAAACATTAGCTTACAATCAAAGGGTATAT
CAAAAAAATTGCTTTAACCACCAAAACTTGAAGGGGCCGTCTTATTTTTG
GTAATTTGGTAATGGTCTTTAGGGTCCTGCCAACCATTTAAAATAAGTTT
TCCCAAGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_n07.g1 MSMg01no261_n07.g1 CHROMAT_FILE:
MSMg01no261_n07.g1 PHD_FILE: MSMg01no261_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:19 2005
         (346 letters)



>mm_chr16_68810874_68811619
          Length = 746

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/346 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcaaagtcactaaggtctcaccattgtccttctgttctgtgataaaatgttctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcaaagtcactaaggtctcaccattgtccttctgttctgtgataaaatgttctgctg 260

                                                                       
Query: 61  tgagttaggaaattgcactagtcatcaactcatcactcttaaaacattttctcatgtttt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagttaggaaattgcactagttatcaactcatcactcttaaaacattttctcatgtttt 320

                                                                       
Query: 121 tgacttaacttaatttcctttgtaaaatcatgtgctaccaataagatatcataatataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacttaacttaatttcctttgtaaaatcatgtgctaccaataagatatcataatataaa 380

                                                                       
Query: 181 ttgacatttgacgaagttgcctttgtacattgggtaaacatttaatcttcctttcctaaa 240
           ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgacgtttgaagaagttgcctttttacattgggtaaacatttaatcttcctttcctaaa 440

                                                                       
Query: 241 gattcctgagcatccttaaagggctcaacaagtattctgtaaactttcataccagattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcctgagcatccttaaagggctcaacaagtattctgtaaactttcataccagattat 500

                                                         
Query: 301 ctccaatatttgctagacatgaatcttaacttggcaacttaaatca 346
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ctccaatatttgctagacatgaatcttaacttggccacttaaatca 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)