BAC Information

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BAC

Clone NameMSMg01-262O07
Chromosome16 (Build37)
Map Location 43,532,664 - 43,533,188
singlet/doubletsinglet
Overlap geneZbtb20
Upstream geneBC002163, LOC667484
Downstream geneLOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262O07.T7 (MSMg01no262_o07.b1)MSMg01-262O07.TJ (MSMg01no262_o07.g1)
ACCAG404869AG404870
length731725
length of high quality
(start - end)
521 (44 - 564)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no262_o07.b1 PHD_FILE: MSMg01no262_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:38 2005CHROMAT_FILE: MSMg01no262_o07.g1 PHD_FILE: MSMg01no262_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGGATCCGCGGA
ATTCAAGAAGACAATACCCAGTATTTTTAAGCAAAGTGGGGCACCTTCAA
AGAGCTGAGTAGACAAGAGGAACATTACTCCGTTGTTTTAGTCTCTGTTC
TGTTGCTATGAAGGAACACCATGACCAAGGCAACTCTTATAAAAGAAAGT
GTTTACATTTTCAGAGGTGTAGTCCATTATCATCATGGTACGGAGAATGA
TGGCATGCAGGCAGTTGCTAGAGCAGTAATTGAGAGCTTTGCATCCTGAT
CCACAAGCAACAGGAAGAGAAACTGGCCTGGTATGGGATTTTGAAGCCTC
CAAGTTCACCCCAAATGGCATACTTCCCCCCAAAGGTCACACCTACACCA
ACAAAGCCAAACCTTTTAATCCTTTTAATCCTCTTGAACAGTTCCACTCA
CTGGTGACTGAACATTCAAATATAGGAGAACATTCTTCCTCAAACTATCA
CACCTGTCTACATCACAGGATGTTTTTGTATTATTTTAAAGTCTCGGCAA
CAGACAGCTTTGCGAAGGGGCATTTTCCTGTCTGGGTGACAGACAGGCCC
GTAAGATTGACTCTTAAAGAGTAATGGAATGTTCTTGCTCTTTATCAAAA
ATCCTCTTGCTGGCTTTGCTGGAACCTAATCTTGAAATCCAGTTTAAAAG
CTCCAGGTAGCAAGTATTTAAAATGGTTTAN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAACTGAGATGACATAGCCTAA
CAATCCACTGGAAGACAGAAGACAGAGTGTCAGTAATCAGACATGGAGAG
CATGTTTAGGGTAAGGGGCACTTTTTGTATCCTAGATAGAGTGTGATCAG
AGCCAGCCAAGGAGAGCAGTGAAAGGGTATACATTAGTTAAGGTCAATCT
AGGGAATTTTCTAGATTTTATACCCAGGTATATAGAAGATAATATCTTTT
TTTAAAAAATGGGAATCTTTAGCAAAAGATTGGGCCATTGGATGTGACAT
GGACTATAGTTATGCATAATGTAACTAGCAGAATAATTTAAACATGAAAA
CGGCATGATCCTTGTTATGTAGAATTTGAGGTGCTAACAGAACAGAACAG
CCATTCTGAAAAAGGAGGTTTTAACCAAGTTAAAACTTAGCTACTTAGTT
CAGTAGCCTAGGCTATGAGAAAGTGGATATCTTGAATGTATAAACAAAGA
AGAAAAACCTATGGTCCTGAAATGGTGCCGCGAGTGACAACCTGTTCAGG
AGATGCCAAAGGGGAGATTGGCGAATCTTGGAAAGGTTTGAGCCAAGAAT
TTAAACTTCAGAAGTCAAGGACAGGGAAAGAAGCCACTTTAAGTTTTTTC
AGAAGGAATAGTGATTAAGAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_o07.g1 MSMg01no262_o07.g1 CHROMAT_FILE:
MSMg01no262_o07.g1 PHD_FILE: MSMg01no262_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:39 2005
         (525 letters)



>mm_chr16_43532464_43533388
          Length = 925

 Score =  953 bits (493), Expect = 0.0
 Identities = 517/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaactgagatgacatagcctaacaatccactggaagacagaagacagagtgtcagtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaactgagatgacatagcctaacaatccactggaagacagaagacagagtgtcagtaat 260

                                                                       
Query: 61  cagacatggagagcatgtttagggtaaggggcactttttgtatcctagatagagtgtgat 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cagacatggagagcatgtttagggtaaggggcacttttcgtatcctagatagagtgtgat 320

                                                                       
Query: 121 cagagccagccaaggagagcagtgaaagggtatacattagttaaggtcaatctagggaat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagccagtcaaggagagcagtgaaagggtatacattagttaaggtcaatctagggaat 380

                                                                       
Query: 181 tttctagattttatacccaggtatatagaagataatatctttttttaaaaaatgggaatc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tttctagattttatacccaggtatatagaagataatatctttttttaaaaaatgtgaatc 440

                                                                       
Query: 241 tttagcaaaagattgggccattggatgtgacatggactatagttatgcataatgtaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagcaaaagattgggccattggatgtgacatggactatagttatgcataatgtaacta 500

                                                                       
Query: 301 gcagaataatttaaacatgaaaacggcatgatccttgttatgtagaatttgaggtgctaa 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagaataatttaaacatgaaaatggcatgatccttgttatgtagaatttgaggtgctaa 560

                                                                       
Query: 361 cagaacagaacagccattctgaaaaaggaggttttaaccaagttaaaacttagctactta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 cagaacagaacagccattctgaaaaaggaggttttaaccaagttaaaacttatctactta 620

                                                                       
Query: 421 gttcagtagcctaggctatgagaaagtggatatcttgaatgtataaacaaagaagaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcagtagcctaggctatgagaaagtggatatcttgaatgtataaacaaagaagaaaaa 680

                                                        
Query: 481 cctatggtcctgaaatggtgccgcgagtgacaacctgttcaggag 525
           ||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 681 cctatggtcctgaaatggtgccgtgagtaacagcctgttcaggag 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)