BAC Information

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BAC

Clone NameMSMg01-263G03
Chromosome16 (Build37)
Map Location 95,727,581 - 95,727,919
singlet/doubletsinglet
Overlap geneErg
Upstream geneDscr3, Dyrk1a, Kcnj6, LOC666201, Kcnj15
Downstream geneEts2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263G03.T7 (MSMg01no263_g03.b1)MSMg01-263G03.TJ (MSMg01no263_g03.g1)
ACCAG405222AG405223
length825735
length of high quality
(start - end)
---339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no263_g03.b1 PHD_FILE: MSMg01no263_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:17 2005CHROMAT_FILE: MSMg01no263_g03.g1 PHD_FILE: MSMg01no263_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTCCGNGACTACCGC
GNAATTCTACGTCTATTGCAGAAAAATACNNGGAGACATTTTCACGCTGG
CCNAACTTACNCNCTCATACTTGCCCCCCNCTGCTGCNCNNNTATAAAGA
CCTCCCAGTCCTGCCTCCNCCCTGATGCNCTTCCTCTANCACATCCTCAC
CTCCTCCAGTATGCCACCCCCCCTCCAGTANGCCCCTCCCCCTCCNGTAG
GCCNCNCTCCTTTCCACCCTCCCCCTTCCTNCCCTACTCCCNNCCTCCNN
TAAGCCGCACCCCTCCCCTATNCCTCTTTCCCTCCCCCATNCCATCCCCA
TTTTCTTCCTCTTCCTTTTTTTTCTTGTCCCCCCCCCCCCCCCTTTCTTC
TTCTCCTTCCTTTTCCTTTTTTTCCTTGTTTTCCCCCCCCCCCNNNCCCA
AACCCATTTCTCCTTCCCCTTTTTTCCCCTGGCTTCTTCCTAACCCCNNT
TTTCCCTCTCTCCCTTCTCCCCCTTTCCCCTTTCTCTCTCTCCTTTTCTT
CCCTCTTTACCCCCCTTTTCCCTCTTTCCCTCTCCCTCCCTTGTTTTCCC
TCCACTTTTTCCCCCTACTTTCCCTCTCTAGTTTTCGCGTTTTTCCCCTT
CCGCTCTTATTTTCTAAACCCCAACCCCTCCTCTTTCTTTTTTATAGAGA
TAACTAGTCACCTAGTCCTCNNCTNAGTTTCCTTTTTCCCTCCCCTTCCC
TTCCTTCACAAAAAATAAGAGGGGATTTTCCCATATTTCCCCCCNTCCTT
ATTTGCATAATAGAATGGTAGTTAA
GACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAAGGATTGTTTTGTACATGCCGC
ACTTTTGTAGGTATGCAGCAGGGTAATACAGTGGCAGATGACAATTTTAG
AACAGAAGCTTGTTTGCAACCATGTGTCTATTCTCCATTTAAAAAATGCA
CAGAAGGAAAAAGTAGCACCAGTGATGGAGAAAGAACTGCCTTTGTGTAT
ACAGGGCCCCTAGCTACTCTTCGTGGGAGCTCAGCAGTAAGCAGACAGGT
CCTCTCTGTGGGAGGGACACTGCCAGGGAAAAGAGGAGAGAGGAGGGGGA
TGGTGGTAGCCATATTAGAGGCCCGGTTCCTGGTACTAAGGTAAGTCACT
GCACTGGATTCTAGACCCCCCAATGATGACTGCTGGTTGCTGTACCAACG
TTGTCTTCCATTGCTGCACAATGCTAAGCTTCATCCATAGGGATGTCTTC
TGGAAGCTGGGCAGGAAAATCGCGCCTCACAGCTGTTTGCGGTAGGAATA
ACGCACCGTCCATCAATCTGTTATTTGTCAGTGTAGTCTGTATTTCTGTT
TTCTCATTGCACCTCCGACGCTGCCTCTACCATATCTGATGCTCATACCT
GGTGCCCGAACTTTATCCAACGAAGAACGACTGCCACCCTCCATCGCCAT
TTACACTGTCCTACGGATCCCTCTTTATTACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_g03.g1 MSMg01no263_g03.g1 CHROMAT_FILE:
MSMg01no263_g03.g1 PHD_FILE: MSMg01no263_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:17 2005
         (339 letters)



>mm_chr16_95727381_95728119
          Length = 739

 Score =  601 bits (311), Expect = e-176
 Identities = 332/339 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggattgttttgtacatgccgcacttttgtaggtatgcagcagggtaatacagtggc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggattgttttgtacatgccacacttttgtaggtatgcagcagggtaatacagtggc 260

                                                                       
Query: 61  agatgacaattttagaacagaagcttgtttgcaaccatgtgtctattctccatttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgacaattttagaacagaagcttgtttgcaaccatgtgtctattctccatttaaaaa 320

                                                                       
Query: 121 atgcacagaaggaaaaagtagcaccagtgatggagaaagaactgcctttgtgtatacagg 180
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 atacacagaaggaaaaagtagcaccagtgatgtagaaagaactgcctttgtgtatacagg 380

                                                                       
Query: 181 gcccctagctactcttcgtgggagctcagcagtaagcagacaggtcctctctgtgggagg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccctagctactcttcctgggagctcagcagtaagcagacaggtcctctctgtgggagg 440

                                                                       
Query: 241 gacactgccagggaaaagaggagagaggagggggatggtggtagccatattagaggcccg 300
           ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct: 441 gacactgccagggaaaagaggggagaggagggggatgatgggagccatattagaggcccg 500

                                                  
Query: 301 gttcctggtactaaggtaagtcactgcactggattctag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcctggtactaaggtaagtcactgcactggattctag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)