BAC Information

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BAC

Clone NameMSMg01-264L20
Chromosome16 (Build37)
Map Location 33,504,731 - 33,504,966
singlet/doubletsinglet
Overlap genenone
Upstream geneZdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
Downstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L20.T7 (MSMg01no264_l20.b1)MSMg01-264L20.TJ (MSMg01no264_l20.g1)
ACCAG406203AG406204
length714735
length of high quality
(start - end)
304 (46 - 349)240 (84 - 323)
definitionCHROMAT_FILE: MSMg01no264_l20.b1 PHD_FILE: MSMg01no264_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005CHROMAT_FILE: MSMg01no264_l20.g1 PHD_FILE: MSMg01no264_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAATATCCTGGGGTCTCCACTGCAACTGAGGCTGTCTCTTTGCC
ACTGCCTCTCCTGGTCTCTCAGAACACCAAGACTCACTGGCTCTCTGTGA
TCCTTTTATGCTTTCAAATCCAGGATGTGGGGGACTCACTCACTGCCAAG
TTCAGCTCCCAACCTGAGAGGCATACTTGCCATCCCCTGGACCACACCTT
CCATGTGCTGACTTTGAACAAATTACTTTCCATCAATTGGTCTGGCTTCC
TACCAACTAGTGGATATTTTTTCAGCTCCAGTTAACCAGCATCTGGTGTC
CCTGTTAAGTTATGACCCCTANACAGNNCCGCAATGTAGAACGTAACACA
ACTCACTCCCAAAGAGTCTTTGATACACACTGAAAGATCACGAGGCAGGC
CTCCGTGATTTGCATCTCTCCCATCATTCCTGTCTCTAACAACTCGTTAA
GCTCTGAGCACACAACACTTCTAGTCCCAAGTTCCAAATGCCTCCATAAT
CCTTCCCCAAACAGCATGGTGAGTGAGCTCTACCACAGTGATACCCCAAT
TTCCTGGTGTCAGTGTCTTCCCTGGTTTGCTTTCTGTTGCTTCCATAAAC
ACTGGACAAAAGCAAGGCGAGGGATGAAAAGGTTTATTTGACTTACAGCT
TATAGTCCGTTATT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGCAGCACAGTAC
CAACACATCCTTACACTCAGGGTCTGCCTTAACCATACCAAGTACAACAC
TGTGACATGTAATCTGTTGCTGATACCACAATGCTTTCAGATTAAGATGC
TAGCAGCCAAGCTGGCTCAATGGCTAAATAGCCCTGGCTGCTCTTCCAGA
GGATCCGGGTTTGATTCCTGCCACACAAGCCCCTGTACTGGCAGCTGCAG
AGGATTGGGTGCCCTCTTCGGTGCTTGCTCAGCTCTCACTCACATGGTAC
ACAGACACATATGTTTTTTTACACACCCACCTCCCCCTTCCTTTAAAAAA
AAAGATACTGGCAGCTTCAGCCATCTACTGTTAGCACTTATCATAGTGTC
TGGTAAGTAGGTGATGAGTGCTGAATGTAGGGAGAAGGTTCTGAGCCCAG
CCAATGAATATCCAAGTCATCAGGAAACACCAAGTCCTATCCCAAGGAAC
GCTCTCCCTAGGCTCCCTTCCCCACAAGGGAACAGCTGTTTCAGCTTTAA
GGACATGATAAGTTACAAACAGTAAGGTTACAACTTTATAAGCTCATCTG
TGTGAGTAAACACGCAAAGGTCCAAAGGCTCCAAATTTTACAAGTTTTAA
CCCGCCTTTTCCCCCAGCACTTGAAAATGCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l20.g1 MSMg01no264_l20.g1 CHROMAT_FILE:
MSMg01no264_l20.g1 PHD_FILE: MSMg01no264_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:00 2005
         (240 letters)



>mm_chr16_33504641_33505280
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgcagcacagtaccaacacatccttacactcagggtctgccttaaccataccaagt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 agtgtgcagcacagtaccaacacatccttacactcagggtttgccttaaccataccaagt 267

                                                                       
Query: 61  acaacactgtgacatgtaatctgttgctgataccacaatgctttcagattaagatgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaacactgtgacatgtaatctgttgctgataccacaatgctttcagattaagatgctag 207

                                                                       
Query: 121 cagccaagctggctcaatggctaaatagccctggctgctcttccagaggatccgggtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cagccaagctggctcaatggctaaatagccctggctgctcttccagaggatccgggtttg 147

                                                                   
Query: 181 attcctgccacacaagcccctgtactggcagctgcagaggattgggtgccctcttc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 attcctgccacacaagcccctgtactggcagctgcagaggattgggtgccctcttc 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)