Query= MSMg01no269_m12.b1 MSMg01no269_m12.b1 CHROMAT_FILE:
MSMg01no269_m12.b1 PHD_FILE: MSMg01no269_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:18 2005
(615 letters)
>mm_chr16_58045444_58046457
Length = 1014
Score = 957 bits (495), Expect = 0.0
Identities = 543/561 (96%), Gaps = 5/561 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgatttttccaaaacttttatcatgaatgcataaattttcagtaaaaattaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcctgatttttccaaaacttttatcatgaatgcataaattttcagtaaaaattaag 497
Query: 65 atgtgcccttaacccgaaagtgtgatggtagaatggtccctggattcttcaagttggcaa 124
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgtgcccagaaccagaaagtgtgatggtagaatggtccctggattcttcaagttggcaa 437
Query: 125 cttaaaaaaaatctgctcaatttgtccacgtggctgataatgaaaatagccactatgttc 184
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 ctt-aaaaaaatctactcaatttgtccacatggctgataatgaaaatagccactatgttc 378
Query: 185 atctataatatttggaagcctctgaagcctatgttattgttaatcttatttgtttgtttg 244
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 atctgtaatatttggaagcctccgaagcctatgttattgttaatcttatttgtttgtttg 318
Query: 245 tctttctcaatctcaggtttagtgagaattctcaaggaactgaaagaattaattctctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctttctcaatctcaggtttagtgagaattctcaaggaactgaaagaattaattctctcc 258
Query: 305 attgcttctaaatttttatagatagatagatagacagacagacagacagacagacagata 364
|||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||
Sbjct: 257 attgcttctaaatttttatagatagatagatagatagatagatagatagacagacagata 198
Query: 365 gatagatagataaaaataaataaataaaacatgtttttccagtatagttagatctatacc 424
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 197 gatagata----aaaataaataaataaaacatgtttttctagtatagttagatctatacc 142
Query: 425 atataaattatgatacaataataaagaaaaatgaccactcgaaaggtcttaaatataaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atataaattatgatacaataataaagaaaaatgaccactcgaaaggtcttaaatataaaa 82
Query: 485 taagtgaaaaatcacagagaaaatctattaaatgtctgttttccttcatgaaagaaacat 544
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 81 taagtgaaaaatcacagagaaaatccattaaatgtctgttttccttcatgaaagaaacat 22
Query: 545 ttcatctttaagtctggtacc 565
|||||||||||||||||||||
Sbjct: 21 ttcatctttaagtctggtacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_m12.g1 MSMg01no269_m12.g1 CHROMAT_FILE:
MSMg01no269_m12.g1 PHD_FILE: MSMg01no269_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:18 2005
(287 letters)
>mm_chr16_57886416_57887102
Length = 687
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 1 atttcacagactttaataaacattaggctctgccacagttcggatgggcttatctcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcacagactttaataaacattaggctctgccacagttcggatgggcttatctcagac 260
Query: 61 tgtactccagatgagcagtagcaaatagatttttatcctaaaatgtgccatacaattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtactccagatgagcagtagcaaatagatttttatcctaaaatgtgccatacaattgaa 320
Query: 121 ttaagagttgcttcattttaaaatggaaatgctagtactcacttttatattatagtaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagagttgcttcattttaaaatggaaatgctagtactcacttttatattatagtaatc 380
Query: 181 aaggaagaattaatcccagagaaagcagatggatttagtttaatttattcatgatgttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaagaattaatcccagagaaagcagatggatttagtttaatttattcatgatgttgt 440
Query: 241 caccaggaggacagataagcttgtttacacagaatacaaattggatt 287
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 caccaggaggacagataagcttgttcacacagaatacaaattggatt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
