BAC Information

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BAC

Clone NameMSMg01-270A19
Chromosome16 (Build37)
Map Location 18,736,354 - 18,736,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795
Downstream geneCldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A19.T7 (MSMg01no270_a19.b1)MSMg01-270A19.TJ (MSMg01no270_a19.g1)
ACCAG409996AG409997
length731797
length of high quality
(start - end)
326 (41 - 366)239 (69 - 307)
definitionCHROMAT_FILE: MSMg01no270_a19.b1 PHD_FILE: MSMg01no270_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:37 2005CHROMAT_FILE: MSMg01no270_a19.g1 PHD_FILE: MSMg01no270_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATTCCCAGCAACCACATGGTAGCTCGCAACCATCTGTAATGGGATCTAA
TGCCCTCTTCTGTGTGTCTGAAGAGAGCAATAGTATACTCATGTGCATAA
AAATAAATCTTTAAAAAGGGGGGCGGGGGGTGCCATCACTATCTGGCTAT
GCACTCCCAACTGACCTCAAACTCACAGTTCTGTTGCAGCTTCCTGAATG
CTGGGAATAGGGATGTGTCACCAAACTCAGTTTGTCATTAGCTTTAAAGA
CACAGGGGTTTGCCATGTTAAAGAACAAAGCTCTCTGTGAGCATCTTTTT
AAAGGTATAATTATGAGAGAACAACGACTAATTAGCTAGTATTCTTGTTA
GAATACCTAAGATGAATATGAAGCATGCGTAATTTAAATCTACTAGTAGG
ATTATAATATACTTCAATCTCTTCTGCATGATTCAAATTTAATTATTCTA
AGTTAACTTTTTAAATATTTTATTCTCTAGCATTGCTATTAATGTTTCCT
TTGGTTTTTTTGTTTGTTTGTTTTTTGTCTGTTTGTTTTTTGGTTTTTTT
GTATGTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCT
GGAACTCACTCTGTAGACCAGGCTGGCCTGAAACTCAGAAATCCGCCTGC
CTCTGCCTCCCGAGTGCTGTCATTAAAGGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGTTTTATTAAAAAGATCAGAATACGTTTT
GTAGAGTGTGATATGGTGAGGTGGGAAGGGTGCCTCATGTCTCCTGCTGG
CCCACACTGAAACATCACTACCCCCTGTGGTACCAGCCGTATACTACACG
GGGATAGTACAGAACAGAGCTTATTTAGGGCATAGGAACAGGAGTTGAGA
AGGGAACAGAGACAGAAAAAAATAGGGAGGGGGGAGGGAGGGAGAGAGAA
AGAGACAGAAGGTATTTTATAGAGCCCGCCCCGTACGCTTGTATATCTAT
GCTGATTTTTTTGTGACGCCCCCCCCCCCCCTTGATTTCAGCTTACAGAT
AAACTGTCCCCCCTCTCTTTAGAATAATGTAACCTAGGTGTTCACCGACA
TCTCCGAATGACGCGATTCGAATCGGTCTTATGATACGCCAATTTTTATT
CGCTAACGTCGTGACAATACTGCACCCTAACACTGCTGCTGTTATTTTTT
TTGCCAAATGTGCCGCGAAATTCTGAATATGCTCCTTTTCCTGAAATACC
TGCAAACTATGTGTGAAGTTCACGAACACTCTACCATCTGATTAATCGGC
TCTTTTCCTATTTGTACCTATTTCTTACCTATCCACAAACTCTACACGAC
CCTTATATCTCTCCCTTATCCTCATTCTCTTTTCCCTTTTGTTTGTATAT
CCCCCGCTCCTTTGCTTCTTCACACTTAACTCTTGGTTTATCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a19.g1 MSMg01no270_a19.g1 CHROMAT_FILE:
MSMg01no270_a19.g1 PHD_FILE: MSMg01no270_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:37 2005
         (239 letters)



>mm_chr16_18736154_18736792
          Length = 639

 Score =  412 bits (213), Expect = e-119
 Identities = 231/237 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgttttattaaaaagatcagaatacgttttgtagagtgtgatatggtgaggtgggaag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 201 tgtgttttattaaaaagatcagaatacgttttgtagagtgcgatatggtgaggtgtgaag 260

                                                                       
Query: 61  ggtgcctcatgtctcctgctggcccacactgaaacatcactaccccctgtggtaccagcc 120
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggtgcctcatgtctcccgctggcccacactgaagcatcactaccccctgtggtaccagcc 320

                                                                       
Query: 121 gtatactacacggggatagtacagaacagagcttatttagggcataggaacaggagttga 180
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 atatactacacggggatagtacagaacagagcttatttagggcgtaggaacaggagttga 380

                                                                    
Query: 181 gaagggaacagagacagaaaaaaatagggaggggggagggagggagagagaaagaga 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagggaacagagacagaaaaaaatagggaggggggagggagggagagagaaagaga 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)