BAC Information

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BAC

Clone NameMSMg01-270E15
Chromosome16 (Build37)
Map Location 28,087,765 - 28,269,930
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270E15.T7 (MSMg01no270_e15.b1)MSMg01-270E15.TJ (MSMg01no270_e15.g1)
ACCAG410166AG410167
length721750
length of high quality
(start - end)		328 (44 - 371)665 (73 - 737)
definitionCHROMAT_FILE: MSMg01no270_e15.b1 PHD_FILE: MSMg01no270_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005CHROMAT_FILE: MSMg01no270_e15.g1 PHD_FILE: MSMg01no270_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,269,606 - 28,269,930)(28,087,765 - 28,088,429)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATACAAAAGGTTTAAGTATCTAAAGTGCAGAGTAGCAGAATGTTACA
TCTGGAAGATGTGTTAAGTTATTCAATGTTACTTACACAGCATGGATAGT
GATACTTCCTATTTTCAGACAACACAATCATGTTCAGAAAGGTGGAAATA
AGGGCAGAAGGCAGAGGGCTTGAGAAAGTTCCATCCTGGGCCAAATCTAT
GGAGGCGAACAAATTTAAAGACTGTCAAGATTGCCATTCATGAGAAACTT
TCAGGTGTAGTATATACCTCAAACAATCTAAATTGATGACAATTATACTA
ATTTTCCCCTTGTTACTTTTGCGCCCAAGTATCTTTGAACCTGTGTATCC
TGTGTAGTGGATAGATGCAGTCTGTCCCAGAGAAAGTAAATGTCTTTAGT
TGCCACTACTGCAGTGTATGACAGTAGTGTATAACCAAAAGACCATGTTT
ATGAATTTTCCTTTCTCTTTAAAATTCTCAGTGGATCACACACTATTAAA
GAGATTTGCAGGTTCAGATAGCTCAGTTTTAGAAGAAGTGTTTAGATTCC
AATAACATTGTGAATTCATCATCTTATTTAAGTTCGTGTCCAGCAATCTG
TTATAAGGTACTAAGTTTGTTTTTTTTTCTTCTTTTACAAATGTCAATAG
TAGGTTTTTATTGAGAAGTCT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGCCCTTAGAACCCACATCAAGAAGCT
CAAAATGCCTGTAACTCCATTTTTGTGAGATCCAATAGCCTCTTCTGACT
TCCTTGGGCACCAGGCATGTAAGTGGTGCACATGTATGCAAAGAGGCTAC
TCATACACACACATAAAGTAAAACAAATACAATGTTTATAAATCTTTTGA
TCTCAAAACAGTGGCTAGGTTACAAGGAAGCAAACACTGTTTTGACTGAA
TCTGATGTAGACAAGAAGGTCATGGGAAAGAAGCCAGCAGGAGTGGAGGA
AATGCTAAAGCAGAAGGGAGGGTTAATAGATTGACTGTCTTGAGAGGCCA
AGGCTCACAAAAGAGCCCATCTTTGTGAAATATGAGAGATTCAATCTCCT
TAGAAAGAAGGGTAGAGAAGTCAAATGTCATCTTACCGTGTAGGAGCACT
TGAGCTAAAACAACCAAGACTCGGGCATGCAAAGGACTAGACGACTAATG
CCAGGGAGGACTCACAGGCTGTGCCAGAGCAGCCTTGTCATGAGGCTCAG
ACTTATCTACAACATTCTTCAAGTTTTTATCTAGACAAAGACATACAAAT
TTCAATTTCTCATATAATTCACTTATATAAAATAAATATGTGAGTCAGAC
AGTGGTGGTAAATGCCTTTGACCCCAGCACTCAAGAGGCAGAGGCAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_e15.b1 MSMg01no270_e15.b1 CHROMAT_FILE:
MSMg01no270_e15.b1 PHD_FILE: MSMg01no270_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
         (328 letters)



>mm_chr16_28269403_28270130
          Length = 728

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatacaaaaggtttaagtatctaaagtgcagagtagcagaatgttacatctgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggaattcatacaaaaggtttaagtatctaaagtgcagagtagcagaatgttacatctgga 469

                                                                       
Query: 64  agatgtgttaagttattcaatgttacttacacagcatggatagtgatacttcctattttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agatgtgttaagttattcaatgttacttacacagcatggatagtgatacttcctattttc 409

                                                                       
Query: 124 agacaacacaatcatgttcagaaaggtggaaataagggcagaaggcagagggcttgagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agacaacacaatcatgttcagaaaggtggaaataagggcagaaggcagagggcttgagaa 349

                                                                       
Query: 184 agttccatcctgggccaaatctatggaggcgaacaaatttaaagactgtcaagattgcca 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 348 agttccatcctgggccaaatctatggaggcgaacaaatttaaagactgtcaagactgcca 289

                                                                       
Query: 244 ttcatgagaaactttcaggtgtagtatatacctcaaacaatctaaattgatgacaattat 303
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 288 ttcatgagaaactttcaggtgtattatatacctcaaacaatctaaattgatgactattat 229

                                    
Query: 304 actaattttccccttgttacttttg 328
           |||||||||||||||||||||||||
Sbjct: 228 actaattttccccttgttacttttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_e15.g1 MSMg01no270_e15.g1 CHROMAT_FILE:
MSMg01no270_e15.g1 PHD_FILE: MSMg01no270_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:54 2005
         (665 letters)



>mm_chr16_28087565_28088629
          Length = 1065

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcccttagaacccacatcaagaagctcaaaatgcctgtaactccatttttgtgagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aggcccttagaacccacatcaagaagctcaaaatgcctgtaactccatttttgagagatc 260

                                                                       
Query: 61  caatagcctcttctgacttccttgggcaccaggcatgtaagtggtgcacatgtatgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatagcctcttctgacttccttgggcaccaggcatgtaagtggtgcacatgtatgcaaa 320

                                                                       
Query: 121 gaggctactcatacacacacataaagtaaaacaaatacaatgtttataaatcttttgatc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gaggctactcatacacacacataaagtaaaacaaatacaatgtttaaaaatcttttgatc 380

                                                                       
Query: 181 tcaaaacagtggctaggttacaaggaagcaaacactgttttgactgaatctgatgtagac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tcaaaacagtggctaggttacaaggaagcagacactgttttgactgaatctgatgtagac 440

                                                                       
Query: 241 aagaaggtcatgggaaagaagccagcaggagtggaggaaatgctaaagcagaagggaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaggtcatgggaaagaagccagcaggagtggaggaaatgctaaagcagaagggaggg 500

                                                                       
Query: 301 ttaatagattgactgtcttgagaggccaaggctcacaaaagagcccatctttgtgaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatagattgactgtcttgagaggccaaggctcacaaaagagcccatctttgtgaaata 560

                                                                       
Query: 361 tgagagattcaatctccttagaaagaagggtagagaagtcaaatgtcatcttaccgtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagagattcaatctccttagaaagaagggtagagaagtcaaatgtcatcttaccgtgta 620

                                                                       
Query: 421 ggagcacttgagctaaaacaaccaagactcgggcatgcaaaggactagacgactaatgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagcacttgagctaaaacaaccaagactcgggcatgcaaaggactagacgactaatgcc 680

                                                                       
Query: 481 agggaggactcacaggctgtgccagagcagccttgtcatgaggctcagacttatctacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 agggaggactcacaggctgtgccagagcagccttgtcatgaggctcagacttatctacat 740

                                                                       
Query: 541 cattcttcaagtttttatctagacaaagacatacaaatttcaatttctcatataattcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattcttcaagtttttatctagacaaagacatacaaatttcaatttctcatataattcac 800

                                                                       
Query: 601 ttatataaaataaatatgtgagtcagacagtggtggtaaatgcctttgaccccagcactc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatataaaataaatatgtgagtcagacagtggtggtaaatgcctttgaccccagcactc 860

                
Query: 661 aagag 665
           |||||
Sbjct: 861 aagag 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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