BAC Information

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BAC

Clone NameMSMg01-271A13
Chromosome16 (Build37)
Map Location 95,419,423 - 95,419,553
singlet/doubletsinglet
Overlap genenone
Upstream geneHlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6, LOC666201
Downstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271A13.T7 (MSMg01no271_a13.b1)MSMg01-271A13.TJ (MSMg01no271_a13.g1)
ACCAG410702AG410703
length791744
length of high quality
(start - end)
135 (66 - 200)340 (71 - 410)
definitionCHROMAT_FILE: MSMg01no271_a13.b1 PHD_FILE: MSMg01no271_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:50 2005CHROMAT_FILE: MSMg01no271_a13.g1 PHD_FILE: MSMg01no271_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACATACCACAGCGATCTCTAAATATAACTGTGTGTCTGCTCATG
AGCTGAGTGTAAAACTCCACACCAAAGATCTGACCTGGTTGGTTCAAAAC
CTTTGAAATGGGGAAAGGGAGGAGGGAGGAGGGAGAAGGGAAGAGGNANA
TGNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTTTTTTTTTTNNNNNNNNTTNNNNNNNNNNNNNNN
NNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCCCCCCCCCAAAAAAAAAAAAAAAACACCGGGGG
GGGGCGGGCGCCCAAAAAAACACACCCCCCGGCCACCCAACACACACACC
CGCGACCCACCCCTAAACACCTACCCCGCCGCCAAAAACCCCCCGACGCC
GCGACGACCCCACACGAAAAGGGCCACCCGCCTCCCACCACGTCTACCCC
GTTATTATCCCTCCTTTGTGTAGTTAATTTCGACCTGATCTGTTTTCCAT
ATACTACTCTACCATATGTGTTGTTTATCACTCTATTTTTTTTTATTTTT
TTTCCCATTCCAAGATATCATCCTCTCCCCACTTTCTTTTATTCCTCCGC
CGCCTCTCCCACTTTATCTTCCCCACTTTCATCTCTTTTTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTCTTTTACGTCCTACTAGCTAGATGCT
TTGTGTCATTTTGGAAGAGCGAACTTCAACTGAGAATATGTCACACTGGA
TTGACTTGTGGGCAAACCAGTGGGATATTTTCTTGACTGATGATTGATGT
GGGAGGGGGCTCACTGTGGGTGGTACCATCCTTGAGCTTCTGGTCCTTAG
TGTTGTAAGAAAGCAGACTGAGCAAGCCAGAAGGAGCTGTTCAGTAAGCA
GCCCCCCTCCATGGCTTCCACACCAGCTCCTGCCTCCACGTTTATGCCTT
GTTTGAGTTTCTGCCCTGATTTCCTTTAATGATAAACAGCAGTATGGAAG
CATAAGCCAAACCCCTCTCCTTCCCAAGTTGCTCTTGGTCATGGTGTTTT
ATCACAGCAGGTGAAAGCTTAACCAAGACAGTGAGGTACAGAATATATTT
ATGCTGCCTATAAAGTCTTGGCATGGCAGACACTCACACCTGCCTCTGTA
TTCAGTCCTAGATAATGGAAGCACAGAGGCAGAGAGGAACAGGGTGATTC
GGGGACCTGTAAAAAGGGACTCCAGTTTGGCTGACTCCAGCTGGAAAACA
AAAGCCCAGAGTTGGGCTGCTTTGTTCTGAGAGGACGGAGGCTAAAGGAA
ATCAACAAAAACAAGCCTCAGACACATCTGATTGCCTGAGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_a13.b1 MSMg01no271_a13.b1 CHROMAT_FILE:
MSMg01no271_a13.b1 PHD_FILE: MSMg01no271_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:50 2005
         (135 letters)



>mm_chr16_95419223_95419757
          Length = 535

 Score =  230 bits (119), Expect = 2e-65
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcgatctctaaatataactgtgtgtctgctcatgagctgagtgtaaaactccacaccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 331 agcgatctctaaatataactgtgtgtctgctcatgagctgagtgtaaaactccaaaccaa 272

                                                                       
Query: 61  agatctgacctggttggttcaaaacctttgaaatggggaaagggaggagggaggagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agatctgacctggttggttcaaaacctttgaaatggggaaagggaggagggaggagggag 212

                      
Query: 121 aagggaagagg 131
            ||||| ||||
Sbjct: 211 gagggaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)