BAC Information

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BAC

Clone NameMSMg01-272N22
Chromosome16 (Build37)
Map Location 64,606,112 - 64,606,424
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540, Ckt2
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272N22.T7 (MSMg01no272_n22.b1)MSMg01-272N22.TJ (MSMg01no272_n22.g1)
ACCAG412032AG412033
length742747
length of high quality
(start - end)
316 (42 - 357)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no272_n22.b1 PHD_FILE: MSMg01no272_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:07 2005CHROMAT_FILE: MSMg01no272_n22.g1 PHD_FILE: MSMg01no272_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGAATGTTTACACACGACCTTCATTAAGGCTAAGAATTTCTTCATTT
AGATTTTGGCTTTGCATGATGCTAAGGCTGGTTGTTTCCCAGCACTTTAT
GTCAAAGAGTGATAATTCCTTCTCTTTCTTCGAGATGTGTTTCTGGGTCT
CTAAGCCATCCTCGAGAGCAGGCAGGAAGTCCCTCACACTCTTACCTCAC
TTGGATTTGTTTGTTCTTACTCCATCAGTCCTTCAGAGCCAGTAGGTCAC
GTGACTTGCCCTTTCCTTTCTGAAAAGCACTGGGTAACTTTAATCTTACT
GTGGAGATTTATTTTCTGCCCAACAACCCCTTGTATGTTCTAATTTTAAA
AATTCCCTTTGTTACAGGATTTCAATAAAAACTAAAACACTGTCAGTTAG
TTATAAGCTGTTCAAATAATGGATTTGAGACAAAGTTTGTGAACATCCGG
AAGGATCACTGAAATCTCTGGTTACTTCTCACTTCCCTCCACTGACTCCT
TCACACTTAAGCGTTGTTGGTTTTCTTTTGCAGGGGCCTAACACCATGTC
TTCTCCGATTTAGGCATCTAAAAGTTAGTTGTTGACTGTATTCTGAAAAC
TATCACCAATAATAAGGACAACAAAAGGTTCGAGGACTTAGGAAGAAAAC
CAAAGGAGGCAAAGTCTTTGATTTTACATTTAAAAGCTTTAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATGGAAATAGAATCAATAAAAAACTG
AGGTAAATCTAGAAATCAAATACTTGGGAATTTAAACAAGAATCTCAGAG
GCATTCCTCACCAATAGATTGCAAGAGAATCCTGGCAACAGAAGACAACT
TAGAAGAAAGAGAAATATCAATCAAAGAAAATAGATCAAAGAAAAATTAT
AAAATGTAAATAACTCCAGGCAAAAAAATATCTAGAAAATACTACAGGAC
ACTGTAAGATGGCCAGATTTATGAATAATGATAGAGGAAGGAAAAGAAAC
CCAAGTCAAAGGATTATTTTATACCCCCCACCCCACCATAAAAGAAAAAT
GTTTCTAACTATAGAAGAAGGTGCTTATCTGAGTACAAGAAGTACTACAA
AACACCAAACAGATTAAACCAGAAGATGGATTCTCCTCAGCACATAATAA
TGAAAATATCAAATTTACAGAACAAAAAAGAATATAAAAAGCTAAAAAAG
GAAAATGCTAAACAAAACAAATTATAAAGAGAATTATTAAACTAACACTT
GACTTCTAAATGAAGACTCTAAAAGCTTAAGGCTTAAATAGATTTCTGCA
AAGTCCAAGAGACCACATATCGCACCAAAGACTACTATGACCAGCAAAAT
TTTCAATAACAGTGACAAAATAATGTCATGTATCAATGGGAGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_n22.b1 MSMg01no272_n22.b1 CHROMAT_FILE:
MSMg01no272_n22.b1 PHD_FILE: MSMg01no272_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:07 2005
         (316 letters)



>mm_chr16_64605909_64606624
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgaatgtttacacacgaccttcattaaggctaagaatttcttcatttagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattctctgaatgtttacacacgaccttcattaaggctaagaatttcttcatttagat 457

                                                                       
Query: 64  tttggctttgcatgatgctaaggctggttgtttcccagcactttatgtcaaagagtgata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 456 tttggctttgcatgatgctaaggctggttgtttcccagcactttatgtcaacgagtgata 397

                                                                       
Query: 124 attccttctctttcttcgagatgtgtttctgggtctctaagccatcctcgagagcaggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 attccttctctttcttcgagatgtgtttctgggtctctaagccatcctcgagagcaggca 337

                                                                       
Query: 184 ggaagtccctcacactcttacctcacttggatttgtttgttcttactccatcagtccttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggaagtccctcacactcttacctcacttggatttgtttgttcttactccatcagtccttc 277

                                                                       
Query: 244 agagccagtaggtcacgtgacttgccctttcctttctgaaaagcactgggtaactttaat 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 276 agagccagtaggtcacgtgacttgccctttcctttctgaaaaacactgggtaactttaat 217

                        
Query: 304 cttactgtggaga 316
           |||||||||||||
Sbjct: 216 cttactgtggaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)