BAC Information

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BAC

Clone NameMSMg01-273E17
Chromosome16 (Build37)
Map Location 62,772,437 - 62,772,767
singlet/doubletsinglet
Overlap geneNsun3
Upstream geneLOC100043806
Downstream geneArl13b, Stx19, Pros1, Epha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273E17.T7 (MSMg01no273_e17.b1)MSMg01-273E17.TJ (MSMg01no273_e17.g1)
ACCAG412335AG412336
length733779
length of high quality
(start - end)
318 (38 - 355)40 (68 - 107)
definitionCHROMAT_FILE: MSMg01no273_e17.b1 PHD_FILE: MSMg01no273_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:38 2005CHROMAT_FILE: MSMg01no273_e17.g1 PHD_FILE: MSMg01no273_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
TCTGGGCTCGTTCTTGGTAAAACTGCTCCCAGGACAGCGTTAGATTTCTC
TTCCTTAATGCATTTGAGCTCTGCTGAGGTTGTTAATATTACCCTGGTAA
AAGTGGGCACATTCTAGCAATCCCAGTCCATAGGCTTGTGCCTATGAACC
GAGATCCCATACCTGCCTTAATGCTACTAAACTAATGCTAATCAACTAAA
CTTCTAACCTTCTTATGGCTGGTTATAGATGTTCAGGATCTCGGGTGGAT
ATAAGGCAGTATATAACAAGGCAGGTCTCAGTATCCCCATGCTATGATGG
TCTCTTTATGCTCGCGCCCTCCGATTATAATCTTGGTTTTCAGTATTTTT
AACCATGAAACTATCAATTCCACTTCCTCCCTGACAAATCAAGAGGCAGC
AGCTATCTACTTCAAGGCAAGTAAAGAGAGGTACTGGGGTGTGGAAACGG
TCAGCGGTAAAGGAGTTTGTCCCAAAGCCTGACCACATTACTTTGAGCCG
TAGAGGCATTGAGGGAGGAGACAACTAACTCCTGAAAGTTGATCCTCAGG
GTGCACGTGTTGGAGGGAGATTGCTGACTACTGCAAGTCAGAGTTTGACA
TCCACAAGTGTGTCCTGGCATGTGGACATGTGAACTTCCAACACACACAT
ACACAAAAATCAAGGTTAAAAAAAAAAAAAGAG
ACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTAGCTCGGCAGGACCCCCAAGCTAAAGTCCT
TTCCTTTCTTTCCCCCCTTCTTTCGTACACTCACTCACTAGTATCTCTCT
CTCTCTCTATCTATACAACAAAAAACACCCAACCTCCCCAAAACAAACAA
CACCAAACAACACACCACCACAACACAAACCACCCCAACCCCACAACAAT
CCACCACACACCCCCCCAACCCCACACAAAACCACAAAACAAACCCAAAA
AAAAAAACACACCCACACCTTCCAACCCAACCAACCCCCCCCCACAAAAA
AAAATTAAAATAAACCCAAAAACCCAAAACCCAAAATATATAATTNNTTA
TTTTTTNTTTCCCCCCCCAAAACAAAAAAAAAAAAAATCCCCTCTCCCCC
TCCCCTCCTCCCCTCCCCCCCCCCCCACTTCAACCCCAACCCAAAACAAC
CCACAAAAAACAACAACCAACACCAACCCCCACCCCCACCCCCCAACAAA
CAAACACAAACCCAAACAACACCTCCAAAAACACACCACCACCCCAACCC
AACACACAACACCCCAAACACCCCAAAAAAACAAACCACCCACCCAAAAC
CAACCACCACTCCAAAAGACCCACCCAACACACCCACCCCCCATTCCCCC
CCATCCCAACCCAACCCACAATACCCCCACAACCCCACCACCCCAAAAAA
AAAATATAAAACCACCTCACCACTAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_e17.b1 MSMg01no273_e17.b1 CHROMAT_FILE:
MSMg01no273_e17.b1 PHD_FILE: MSMg01no273_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:38 2005
         (318 letters)



>mm_chr16_62772233_62772950
          Length = 718

 Score =  567 bits (293), Expect = e-166
 Identities = 313/331 (94%), Gaps = 18/331 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatctgggctcgttcttggtaaaactgctcccaggacagcgttagatttctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatctgggctcgttcttggtaaaactgctcccaggacagcgttagatttctct 264

                                                                       
Query: 65  tccttaatgcatttgagctctgctgaggttgttaatattaccctggtaaaagtgggcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttaatgcatttgagctctgctgaggttgttaatattaccctggtaaaagtgggcaca 324

                                                                       
Query: 125 ttctagcaatcccagtccataggcttgtgcctatgaaccgagatcccatacctgccttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctagcaatcccagtccataggcttgtgcctatgaaccgagatcccatacctgccttaa 384

                                                                       
Query: 185 tgctactaaactaatgctaatcaactaaacttctaaccttcttatggctggttatagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctactaaactaatgctaatcaactaaacttctaaccttcttatggctggttatagatg 444

                                                                       
Query: 245 ttcaggatctcgggtggatataag------------------gcagtatataacaaggca 286
           ||||||||||||||||||||||||                  ||||||||||||||||||
Sbjct: 445 ttcaggatctcgggtggatataagtccatgggtggatataaggcagtatataacaaggca 504

                                          
Query: 287 ggtctcagtatccccatgctatgatggtctc 317
           |||||||||||||||||||||||||||||||
Sbjct: 505 ggtctcagtatccccatgctatgatggtctc 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)