Query= MSMg01no274_d19.b1 MSMg01no274_d19.b1 CHROMAT_FILE:
MSMg01no274_d19.b1 PHD_FILE: MSMg01no274_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:45 2005
(604 letters)
>mm_chr16_88785965_88786967
Length = 1003
Score = 957 bits (495), Expect = 0.0
Identities = 570/605 (94%), Gaps = 25/605 (4%)
Strand = Plus / Plus
Query: 1 ggacaccactatgagttcatacatgagaactggtgtgatctcacgtcccatgtcagactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacaccactatgagttcatacatgagaactggtgtgatctcacgtcccatgtcagactc 260
Query: 61 aggagcaaaggtatcattttcctgtcttcccttatgggtttatcacttttt-catccata 119
|||||| ||||||||||||||||||||||||| || ||||||||| ||||| ||||||||
Sbjct: 261 aggagctaaggtatcattttcctgtcttccctcat-ggtttatca-tttttccatccata 318
Query: 120 aagctctaaatgttgagaattgtgaccgtatctcacctcgaagcctcttatgtacataca 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagctctaaatgtcgagaattgtgaccgtatctcacctcgaagcctcttatgtacataca 378
Query: 180 tgatctcccttcgcctctctctctcccaagttcaatctcaattcagttttgcttgatgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgatctcccttcgcctctctctctcccaagttcaatctcaattcagttttgcttgatgaa 438
Query: 240 tgtctgctattggaggtgacatgcatgctaatattgtgtgaccctcattcaagttgtgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtctgctattggaggtgacatgcatgctaatattgtgtgaccctcattcaagttgtgga 498
Query: 300 aaattagaaaggatgcaactaagaatggccatttcatgtacattcacacagaacccaagc 359
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 499 aaattagaaaggatgcaactaagtatggtcatttcatgtacattcacacagaacccaagg 558
Query: 360 taaggcttcaaattctcaaacaagaaaaatgatggttctcattttataccatgaaaggta 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 aaaggcttcaaattctcaaacaagaaaaatgatgattctcattttataccatgaaaggta 618
Query: 420 agcatacccctcctctctctctctctctctctctctctctctctgtctctctctctgtct 479
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 619 agcatacccctcctctctctctctctctctgtctctctct----gtctctctctctgtct 674
Query: 480 ctctctctgtctctctctctgtctctctctgtctctctctgtgtctctctctctctgtct 539
|||||| |||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 675 ctctct--gtctctctctctgtctctctct--------ctgtctctctctctctct--ct 722
Query: 540 ctgtctctgtctctgtctctctctctctctctctctctctctctctcacacacacacaca 599
|| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ct--ctct--ctct--ctctctctctctctctctctctctctctctcacacacacacaca 776
Query: 600 cacac 604
|||||
Sbjct: 777 cacac 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 216
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1003
Length adjustment: 10
Effective length of query: 594
Effective length of database: 993
Effective search space: 589842
Effective search space used: 589842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_d19.g1 MSMg01no274_d19.g1 CHROMAT_FILE:
MSMg01no274_d19.g1 PHD_FILE: MSMg01no274_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:45 2005
(359 letters)
>mm_chr16_88962724_88963485
Length = 762
Score = 617 bits (319), Expect = 0.0
Identities = 350/363 (96%), Gaps = 7/363 (1%)
Strand = Plus / Minus
Query: 1 actaacaattccttaatagaagtttggaccttttgttaagtaacaaagaaactatttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actaacaattccttaatagaagtttggaccttttgttaagtaacaaagaaactatttaaa 502
Query: 61 tgaatttatagatttaaaattattctgtgcacggagatgagataacctgtccctgtttag 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaatttatagacttaaaattattctgtgcacggagatgagataacctgtccctgtttag 442
Query: 121 tgcgctcaacacagggtataaaagcattctggatagctagggatacacacatttaagttt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 441 tgcgctcaacacagggtataaaagcattctggatagctaggcatacacacattcaagttt 382
Query: 181 atcctcactgcaaaacagttctcctctcctgatatcatgagctactacagtggctactcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atcctcactgcaaaacagttctcctctcctgatatcatgagctactacagcggctactcc 322
Query: 241 ggaggcctgggctatggc-a----gcagctttggaggcctgggctgtgggtgtaacagca 295
|||||||||||||| ||| | | |||||||||||||||||||||| ||||||||||
Sbjct: 321 ggaggcctgggctacggctatggtg--gctttggaggcctgggctgtggatgtaacagca 264
Query: 296 tccgcagactgggctgtggctgtggctctggaagctatggatatggctctggcttcggag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccgcagactgggctgtggctgtggctctggaagctatggatatggctctggcttcggag 204
Query: 356 gct 358
|||
Sbjct: 203 gct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 762
Length adjustment: 9
Effective length of query: 350
Effective length of database: 753
Effective search space: 263550
Effective search space used: 263550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
