BAC Information

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BAC

Clone NameMSMg01-275B05
Chromosome16 (Build37)
Map Location 70,463,308 - 70,621,480
singlet/doubletdoublet
Overlap geneGbe1, D16Ertd519e
Upstream geneSpeer2, EG664930
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275B05.T7 (MSMg01no275_b05.b1)MSMg01-275B05.TJ (MSMg01no275_b05.g1)
ACCAG413626AG413627
length762761
length of high quality
(start - end)
234 (127 - 360)302 (70 - 371)
definitionCHROMAT_FILE: MSMg01no275_b05.b1 PHD_FILE: MSMg01no275_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:45 2005CHROMAT_FILE: MSMg01no275_b05.g1 PHD_FILE: MSMg01no275_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,621,247 - 70,621,480)(70,463,308 - 70,463,608)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCCCTATACCCAACAATAAGATAAATGCCAGAAGTGGTGGCAT
TTACCTGTAGTGCCAGCTTTAGTCAGGTCAAGTTAGATGGGTCCCTGGGA
CTCACCGGCCATCCAGTGGAGCCTGCTTGATGACTTCCAGGTCAATCCAA
GAATTTGTCTTAAAGAAACAAGATGACAGCTAAAGAGGGAGAGACAAGAT
TGTCGGTTTTGGTCCACAAGCACATCTACACACATATATTCACAATAGAC
ATATATATGTGTACTTTCTTTATGAACACACAAATAATTAGAGTTTGAAT
AAACAGAATACTTTTTTTTTCCNTGTCATGCCCCAAAGGAACAGATGATT
CTCTATCATTCGATGATTTAAATGTAAAAAAATACCTTTTCATCCGAATT
CCATTCTATGGCAAGGAAAATGGATGAAGGGTCCATTTTATAGAAGGCAG
TACTTGAGAACCCATGATTCCAGCCTCAATCACCTCTTTAAGTCAATTAA
TTGTCTTTTAGTCTATAACAGGTTTCAGTGAAGCAATGACTGAGGACATT
CATAATGAGGTGCATAAATCCATATAGAAAGCTGATCTGGGGAGCCTTTT
CTAACTTACCTGGTAGAAAGCAACAAGAGCTGCAGATTTGCACTTTTATA
CAAATTTACATGAGCTGTGCATATCAAGTTTGAAGTGTTTTCACAAATAA
TTTAGTTTACCT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACTCGCAGAATTCATGCTGTGGAGGAGTCTGAAATGTTCA
CAGCGATAGTTCAGCCTGCCCGTTAAAACCAGAAAATATTACAAAACTGA
CCACTGACCTTTCGAGAAGCTTGGAAAAGTATTGAAGGCATAGTCTCAGG
GAAACAAGTCTGAAGGAAAGAGAGACACTGTTTTTTGGATAAGCAGTTTT
CCTTTTCAAAAATCATTTTATTGATTTCTTTTACGTGTGTGGATGGGTGA
GACCCACAGGTACCATCTATGGCATGTGGAGGTCAGAGGACCACTTGTAG
GGATGCATTTTTCTCCTTCCTCCTGTGGGTTGCAGGATTGAACTCTCATT
TTCACTCTGGGCTGTGTGTTTCTTGACCTACTGAGCCTTCTCACCAATCT
AAATAGTCAGCTTCCTATTTAAAATATATGTTTTTAGACAAAGTATTCCA
CAATGTGAGGTTTAAGTTAAAGAGGCACTGGCAGATTTTAGGCTGTAACA
CCTTCCTATGTTTCCCTGGGCAAACAGACCTAGCCTGAAACAGTGCTTGT
GGGACCAGAGGCCAAATGATTTAGACAGTGTCTCCCTTAGTGGAAACATT
GGCTTCACCCAAGCATGGTGAAGATTGAACCAGAAAACCCTGTGGATGCT
TGTATGTGTAGGAACATGCTGATATCTAACAAACACTGTGGGATTCGCTA
AATTTTTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_b05.b1 MSMg01no275_b05.b1 CHROMAT_FILE:
MSMg01no275_b05.b1 PHD_FILE: MSMg01no275_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:45 2005
         (234 letters)



>mm_chr16_70621047_70621680
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcaagttagatgggtccctgggactcaccggccatccagtggagcctgcttgatgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtcaagttagatgggtccctgggactcaccggccatccagtggagcctgcttgatgactt 375

                                                                       
Query: 61  ccaggtcaatccaagaatttgtcttaaagaaacaagatgacagctaaagagggagagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaggtcaatccaagaatttgtcttaaagaaacaagatgacagctaaagagggagagaca 315

                                                                       
Query: 121 agattgtcggttttggtccacaagcacatctacacacatatattcacaatagacatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agattgtcggttttggtccacaagcacatctacacacatatattcacaatagacatatat 255

                                                                 
Query: 181 atgtgtactttctttatgaacacacaaataattagagtttgaataaacagaata 234
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgtgtactttcaagatgaacacacaaataattagagtttgaataaacagaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no275_b05.g1 MSMg01no275_b05.g1 CHROMAT_FILE:
MSMg01no275_b05.g1 PHD_FILE: MSMg01no275_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:45 2005
         (302 letters)



>mm_chr16_70463107_70463808
          Length = 702

 Score =  528 bits (273), Expect = e-154
 Identities = 294/301 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttcatgctgtggaggagtctgaaatgttcacagcgatagttcagcctgcccgttaaaacc 61
           ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 202 ttcatgctgtggaggagtctgaaatgttcacagtgatagttcagcctgtcagttaaaacc 261

                                                                       
Query: 62  agaaaatattacaaaactgaccactgacctttcgagaagcttggaaaagtattgaaggca 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 agaaaatattacaaaactgaccactgacctttcgagaagcttggaaaagtattgaaggta 321

                                                                       
Query: 122 tagtctcagggaaacaagtctgaaggaaagagagacactgttttttggataagcagtttt 181
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 322 tagtctcagggaaacaagtctgaaagaaagagagacactgttttatggataagcagtttt 381

                                                                       
Query: 182 ccttttcaaaaatcattttattgatttcttttacgtgtgtggatgggtgagacccacagg 241
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttttcaaaaaacattttattgatttcttttacgtgtgtggatgggtgagacccacagg 441

                                                                       
Query: 242 taccatctatggcatgtggaggtcagaggaccacttgtagggatgcatttttctccttcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taccatctatggcatgtggaggtcagaggaccacttgtagggatgcatttttctccttcc 501

            
Query: 302 t 302
           |
Sbjct: 502 t 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)