BAC Information

Click to search

BAC

Clone NameMSMg01-277A21
Chromosome16 (Build37)
Map Location 31,567,594 - 31,567,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277A21.T7 (MSMg01no277_a21.b1)MSMg01-277A21.TJ (MSMg01no277_a21.g1)
ACCAG415062AG415063
length751755
length of high quality
(start - end)
314 (438 - 751)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no277_a21.b1 PHD_FILE: MSMg01no277_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005CHROMAT_FILE: MSMg01no277_a21.g1 PHD_FILE: MSMg01no277_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGCTGGTGACAACTGACTAAGGGTACAGGTCACCTGGGACTAAA
GACCTAGTGCAGCCCAGGATATTCCAAGTAGTGTGAATGTGTGACCAGGT
TGACTTTCAGGGTCTTCCACCAGCCCTCCCAGATCAGCTCTCCTCTGTTC
CTCTGAATTTTAATCTATATTCCACACTTTGGACTGCAATCTGACCTTGA
ATAGGGGTCAGGGATGTCAAGGTCAGCTTGGGGCTTGCAACAGGCCCTGG
GAAGAATATGGAGATTGGCCAGTAGTCTCATTACACTGCAGGCTTTCTCA
GAAGCTCCAATGTTGTTGTTTCTCGCACCACCCCCACTAGTAGAGAATGT
GCCTTGTTCACTCCCCACCAGTTTAAGGGACATAAAAGACCCGTGAGCGA
ACCTGTCAGTGAGCCCCCTTCCACCAGACACCACCCAACATCTGGAGCCC
TCTCCCTTGGCAAGAGCTAAAGTGTTGCTCTGAGTTGGCTGTGTTGTTCC
GTTAAACTGACTTTGATCCAAGGGGCACCGGGGGTTATGCATTTCAGTGA
AGGTGGTGTAGTGCCCATGGGCATCAAAGGCAGGCATATTCTTAGTCTAG
AGACTAGGAAGCATCCTCTCCTTGAAGGTACCCGCCCACCCCACGCCAAG
CAGAGGCATGAACCTCTGTGCAGGTGCCAAGCCTTTCCACCCCTGAACAG
G
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCCGACCTTCAAAAAAGACCTA
ATACCAATATTTCAAACATTTCACAAAACAGAAACAGAAGGAACACTACC
TAAATCATTCTATGAAGCCACAATTACGCTGATACCTAAATCACACATAG
ACCCAACAAGAAAGAGAACTTCAGACCAATTTCCCTTATGAATATCAATG
CAAAAATACTCAATAAAATTCTCCCAAATCAAATTCAAGAACACATCAAA
ATCATCATCCATCATGATCAATCAAGTAGGCTTCATCCCAGGGATGTAGG
GATGGTTCAATATATGGATTTCTTTCACCGCCCCCCACTATATAAACGAA
CTCAAAGGAAAAAAAAAATGGTCATCTCATTAAATGCTGAGAAAGCATTT
GACAAAATTCAACACCCCTTCATGGTACAAGTCTTAGAAAGACCAGGAAC
TCAAGGCCCATACCTAAACACAGTAAAAGCAGTACACAGCAAACCAGTAA
CTAACATCAAGCTAAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGTCTGCACACTCTCTCCCTACATAGTCAATATAGTACT
CAAAGTCCTAGCCAGAGCAATTAGACAACAATAGGAGGTCGAAGGAATAC
AAATTGGAAAAGAAGAAGTCAAAATATCACTATATGCAAATGATATGATA
GTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_a21.b1 MSMg01no277_a21.b1 CHROMAT_FILE:
MSMg01no277_a21.b1 PHD_FILE: MSMg01no277_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:07 2005
         (314 letters)



>mm_chr16_31567394_31568107
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacccgtgagcgaacctgtcagtgagcccccttccaccagacaccacccaacatctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacccgtgagcgaacctgtcagtgagcccccttccaccagacaccacccaacatctggag 260

                                                                       
Query: 61  ccctctcccttggcaagagctaaagtgttgctctgagttggctgtgttgttccgttaaac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctctctcttggcaagagctaaagtgttgctctgagttggctgtgttgttccgttaaac 320

                                                                       
Query: 121 tgactttgatccaaggggcaccgggggttatgcatttcagtgaaggtggtgtagtgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactttgatccaaggggcaccgggggttatgcatttcagtgaaggtggtgtagtgccca 380

                                                                       
Query: 181 tgggcatcaaaggcaggcatattcttagtctagagactaggaagcatcctctccttgaag 240
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgggcaccaaaggcaggcatattcttagtctagagactgggaagcatcctctccttgaag 440

                                                                       
Query: 241 gtacccgcccaccccacgccaagcagaggcatgaacctctgtgcaggtgccaagcctttc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacccgcccaccccccgccaagcagaggcatgaacctctgtgcaggtgccaagcctttc 500

                        
Query: 301 cacccctgaacag 313
           |||||||||||||
Sbjct: 501 cacccctgaacag 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)