BAC Information

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BAC

Clone NameMSMg01-279L14
Chromosome16 (Build37)
Map Location 52,115,476 - 52,115,796
singlet/doubletsinglet
Overlap geneCblb
Upstream geneLOC627543
Downstream geneAlcam, LOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L14.T7 (MSMg01no279_l14.b1)MSMg01-279L14.TJ (MSMg01no279_l14.g1)
ACCAG417007AG417008
length758761
length of high quality
(start - end)
325 (45 - 369)305 (77 - 381)
definitionCHROMAT_FILE: MSMg01no279_l14.b1 PHD_FILE: MSMg01no279_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:24 2005CHROMAT_FILE: MSMg01no279_l14.g1 PHD_FILE: MSMg01no279_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTTGCTTATCCCCGATAATGATGATAAGTGAAAACGATTTTATT
TAATCTACTGGTGACTTTAAACTTCAGAATAGTATTGTTTTCAAAAACAG
ACCCATAGGAGGTTGTCTCTACAAACAGTCAGATTATCATTTTATAAATT
GTTTTGTTTGCTGCTTAATGACTGTTATTGTGACTTACTTCCCTGAAGGG
ATAGTCATTTCTAACAAAGCATTTAGAATGAATTAAAATAGAAAACAAAC
CATTGTTCATAAGATGTTATGATACTCATAAATATAATTTCAGGTCAGCC
CTTATGAAAGCAGGGAATATAAAACCAGCTTTCCCACCAGAGCCCTGCTC
TCTGCCTGTGTAGCAGCCATTAGCCCCATCTGCTGAGAGCCTTGGGAACA
CAGAATGCCCATGACAAGGGGAATAGAAGAGCCTGCCTGTGCCAGATTAT
TAGGGGACTCCATTTACTATTTCAAAAGTTCAGCCTTATCTTTACTTCCT
ATTATTCTATTCACCAGGAGATAATAGCAATATGTAGTAAAAGAACATTA
TTGAAGAAATCTGTCAAAGTAAGTTATACAAATCTTCATATTTTGTAATA
ATGTTTATAATCCAGAAAAGAAAGTACCGTTAATCCAGAAACATTTTCAG
TCTGGCACATTTCCTAACTCACACAAGTATATAATTGCCTAAGAAACAGG
GCAGGAGG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAACGTGGAGCGGCCTGTGTG
GGAGACTTAGGCAGCGCAGCTCTGTAGATGAAGGCTTCCTCCAGACTCTC
AATTGAGATTCCCCACGGACAGTCCTGGCTTGTCCATGCTATATATTTAC
TGTTTATCGTGGTAAACGGACACATACAACTTCCTCGGATACACCAGAGA
TGACATACCTTTTGCAGGAAGGAATGACCAGGAAGGGAAGCTCATTGGCT
AAACCCTCAGGGCTCACCTAGTTACCTCATTAGCATGGAGAACTCTGTTC
CTGGCTATATGACCAGTGCTCTTGTTCCTATACGCACGCGTGGTCATGCG
TTCCAGGCCAGGAATCTGGCCAGGAGTTGGGAAACTCCTACCGTCCTCAG
GTGGGTGCCGGAGCTTCTGAACCCACTCAAATTCACCAAGTTCTCTGGCA
CAGTCATCTACCCGCACAAACTTCTTTGACTTTCACTACGAAGTCAGATA
CCAATGAACAGTTGTGCTAGGATTCTATTAGTCGATAAGTTACATGAACA
GCTAAAACTATCCCGTGGAAGCTGAGTGTGGGTTACTCTGGGGAGGACGG
GGGTAATGTAAAGATTTGGCAACGCCTTATTTTTTGAGGGCAACACTATT
TACCCTTTGTGATGATAATTTTCCCTAATTCCTCAAATTTTTCCCGAATA
TGTGTCTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l14.b1 MSMg01no279_l14.b1 CHROMAT_FILE:
MSMg01no279_l14.b1 PHD_FILE: MSMg01no279_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:24 2005
         (325 letters)



>mm_chr16_52115272_52115996
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgttgcttatccccgataatgatgataagtgaaaacgattttatttaatctac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgttgcttatccccgataatgatgataagtgaaaacgattttatttaatctac 264

                                                                       
Query: 65  tggtgactttaaacttcagaatagtattgttttcaaaaacagacccataggaggttgtct 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggtgactttaaacttcagaatagtattgttttcaaaaacagacccataggaggttgtct 324

                                                                       
Query: 125 ctacaaacagtcagattatcattttataaattgttttgtttgctgcttaatgactgttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacaaacagtcagattatcattttataaattgttttgtttgctgcttaatgactgttat 384

                                                                       
Query: 185 tgtgacttacttccctgaagggatagtcatttctaacaaagcatttagaatgaattaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgacttacttccctgaagggatagtcatttctaacaaagcatttagaatgaattaaaa 444

                                                                       
Query: 245 tagaaaacaaaccattgttcataagatgttatgatactcataaatataatttcaggtcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaaaacaaaccattgttcataagatgttatgatactcataaatataatttcaggtcag 504

                                
Query: 305 cccttatgaaagcagggaata 325
           |||||||||||||||||||||
Sbjct: 505 cccttatgaaagcagggaata 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)