BAC Information

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BAC

Clone NameMSMg01-280K12
Chromosome16 (Build37)
Map Location 61,408,809 - 61,409,169
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, EG668168, LOC668170, LOC100043524, LOC668183
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280K12.T7 (MSMg01no280_k12.b1)MSMg01-280K12.TJ (MSMg01no280_k12.g1)
ACCAG417694AG417695
length747747
length of high quality
(start - end)
364 (382 - 745)361 (387 - 747)
definitionCHROMAT_FILE: MSMg01no280_k12.b1 PHD_FILE: MSMg01no280_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:33 2005CHROMAT_FILE: MSMg01no280_k12.g1 PHD_FILE: MSMg01no280_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTTTTTTACATTCTTTTGTTTTCTCACTTATGTCTTTTACAGA
AATTAATTTTTTTTCTCTTAAAAACCATCCTGATTATTGTTTTCCCTTCC
TCTATTTCTTCTAGTTCCTCCCTGCCTCCCTTCCCCTACAGATCCACTCT
CTTTCTATCTTTCATTAGAAAAGAACAAGCTTCTAAGATACAAAAATCAA
ACATGCCAAAATAAAATACAAAATGAGAAGAGATAGAGGAAGAAAATATG
GATCTATATGGAAGGGGGAAATAAAATAGAAATTATGAATGGACTGAGAG
CAGGTGGGGACCATGTTGGCATCACATAGAAGGAGAGGAGATTGAAAAAG
AGATTCTGGAAAATGGTTGCTGGAATTGGAGCACTTGGGATGTAGTGTGG
AAACTTAGTGCTATGGAAACTTCCTAAAATGTGTGAAGGCGACTCTACTG
AGGACTTCTCGTGATGAGAGATATGGAGTTTTAAATGGTCATTTACTGTC
TCCATGTGTGGCTTTTAGTGGTAAGACTGGTTTGCATTTGCTTGAGTTGT
TAGCCATGGTGGTTCCACAGATATCCCCCAATAACCTAGGCTGTAGCTAA
GTAAAATGATCCTCTGGAAACTAATGCAGGAGCTGATTGTATAGAATAAG
ACTGACAAAAATTATTGGACATTGACTGCAAAATTGAGCTGGTGCCT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAACTGAGGAATCTGAAATGGCT
GAGAATCATCAAAAGAAATGTTAAACCTCCTTTGAATTCAGAGAAATGCA
AATCAAAATGACCCTGAGATTCCACCTTAAATCAATCAGAATGGCTAAGA
TCAAAACCTCAGTTGACAACCCATGTTGAAGGGGATGTGGAGAAAGAGAA
ACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTATATGACCCACCTTT
ACCTTTCCTTAGTAAAATTTCCAGGACTATACCCTTTTTTGTTCCTGGTC
TGTTTACAATAACCATATTTATAGATCCCTCCCCATCTCCTGGGTGAATA
ATGAAAATATAATTACACATACATGGTATAATTTTATTAAAATCCAAATA
AAAATATGTTAAGACACTTTTAAAAAATTGATCTGTAAAAATTATTATTT
TGAGTCTGTAGCCATTTGTGTATAACTTGTACTATATGAGGAATTCAAAA
AACAAGAAAGGAACCGTGGTGGGGGAACTGTATTAAGGAAGAAGAGATAA
TTGGCTCTAGATAGAAGTATAGAAGAGAGAGAGTAGTGGTGAATTATGTT
AGTATTATTCTATGTACTGAAGTATACTAAACCATATTTTAATTATGATA
CCTTGATATTATGAAAACTGTAAAACTGTGTATTTGAAAAAACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_k12.g1 MSMg01no280_k12.g1 CHROMAT_FILE:
MSMg01no280_k12.g1 PHD_FILE: MSMg01no280_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:33 2005
         (361 letters)



>mm_chr16_61408609_61409369
          Length = 761

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctgggtgaataatgaaaatataattacacatacatggtataattttattaaaatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcctgggtgaataatgaaaatataattacacatacatggtataattttattaaaatcca 502

                                                                       
Query: 61  aataaaaatatgttaagacacttttaaaaaattgatctgtaaaaattattattttgagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaaaatatgttaagacacttttaaaaaattgatctgtaaaaattattattttgagtc 442

                                                                       
Query: 121 tgtagccatttgtgtataacttgtactatatgaggaattcaaaaaacaagaaaggaaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagccatttgtgtataacttgtactatatgaggaattcaaaaaacaagaaaggaaccg 382

                                                                       
Query: 181 tggtgggggaactgtattaaggaagaagagataattggctctagatagaagtatagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtgggggaactgtattaaggaagaagagataattggctctagatagaagtatagaaga 322

                                                                       
Query: 241 gagagagtagtggtgaattatgttagtattattctatgtactgaagtatactaaaccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagagtagtggtgaattatgttagtattattctatgtactgaagtatactaaaccata 262

                                                                       
Query: 301 ttttaattatgataccttgatattatgaaaactgtaaaactgtgtatttgaaaaaactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaattatgataccttgatattatgaaaactgtaaaactgtgtatttgaaaaaactgt 202

            
Query: 361 t 361
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)