BAC Information

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BAC

Clone NameMSMg01-280M10
Chromosome16 (Build37)
Map Location 27,917,196 - 27,917,480
singlet/doubletsinglet
Overlap genenone
Upstream geneGm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12, 1600021P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280M10.T7 (MSMg01no280_m10.b1)MSMg01-280M10.TJ (MSMg01no280_m10.g1)
ACCAG417783AG417784
length725727
length of high quality
(start - end)
218 (434 - 651)286 (437 - 722)
definitionCHROMAT_FILE: MSMg01no280_m10.b1 PHD_FILE: MSMg01no280_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:42 2005CHROMAT_FILE: MSMg01no280_m10.g1 PHD_FILE: MSMg01no280_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTCCCCAAAAAAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCTTGGCCATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGTATGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAATATGTTTTCTCCCGCAACAACGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGATGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAA
GAATGATGACTGAAGCGTGCACACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTCCTAATGAAGACCAGTG
TAGGATTTGCTACTGTGGCTTTCCCGAAGTAGCAACTCAATAAGGCTGGG
GAAATTAAATTTTTTGACAGTTGCAAATGGTTATTTCAGGCAGCATATTC
CAAGACTGCAGGTGGGATGACCGACAGTCAATATTGCTGTTCACATATGA
GGTTCATGTGAGGACCCAAGGAATAGACCCGGAGACATAAATAATGTCAG
AGCACAGACTATCTCACAGTACTACATCACAGCTCTCTTCTAGATGTTCT
GTTGTTTTCTCTATTTATTTTTACCCCCCCCCCCTATATGATTCCCAGTC
AGTCATAAAACCTTTACAATACTGTTGTAACTCCGAGAAAATACTGTAGG
TCTTATGTACAAGTCCTCAGACATAATATTGGGACCTGAAAGTATATACA
TACAGAGGCACTTAAATGCAGACATTCCATGGTATTGTTCATGAATATTG
TTAGCAAAGGTTATAATACGAAGCCAATTGGCTGCGTGATCACATATTGT
GCAATGGCAACAAAGGTGCCGAATAGTTTAATGCCGAGTCGGCATCAGGA
GCACCTTTTCTCTTGTTTTATGTAAACAGTTTCGTTGTTCACTTGCTTAC
TTTTTCTCTCCACAAACTACAGACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_m10.g1 MSMg01no280_m10.g1 CHROMAT_FILE:
MSMg01no280_m10.g1 PHD_FILE: MSMg01no280_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:42 2005
         (286 letters)



>mm_chr16_27916996_27917680
          Length = 685

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaatactgtaggtcttatgtacaagtcctcagacataatattgggacctgaaagtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaaaatactgtaggtcttatgtacaagtcctcagacataatattgggacctgaaagtata 426

                                                                       
Query: 61  tacatacagaggcacttaaatgcagacattccatggtattgttcatgaatattgttagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tacatacagaggcacttaaatgcagacattccatggtattgttcatgaatattgttagca 366

                                                                       
Query: 121 aaggttataatacgaagccaattggctgcgtgatcacatattgtgcaatggcaacaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaggttataatacgaagccaattggctgcgtgatcacatattgtgcaatggcaacaaagg 306

                                                                       
Query: 181 tgccgaatagtttaatgccgagtcggcatcaggagcaccttttctcttgttttatgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgccgaatagtttaatgccgagtcggcatcaggagcaccttttctcttgttttatgtaaa 246

                                                         
Query: 241 cagtttcgttgttcacttgcttactttttctctccacaaactacag 286
           |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 245 cagttttgttgttcacttgct-actttttctctccacaaactacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)