Query= MSMg01no288_m01.b1 MSMg01no288_m01.b1 CHROMAT_FILE:
MSMg01no288_m01.b1 PHD_FILE: MSMg01no288_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
(676 letters)
>mm_chr16_40683257_40684332
Length = 1076
Score = 1220 bits (631), Expect = 0.0
Identities = 657/673 (97%), Gaps = 13/673 (1%)
Strand = Plus / Plus
Query: 5 gaattcatcaagtggatgccctgaactaggattagaattttactcaaacttaaacaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaagtggatgccctgaactaggattagaattttactcaaacttaaacaaaat 264
Query: 65 gaaaaacatgagaagattctagaaggctaaaataaagaatcatgaagtaggaaaatttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaaacatgagaagattctagaaggctaaaataaagaatcatgaagtaggaaaatttca 324
Query: 125 tgtaaaaaaataacctccaaccatatcctccccaaagcctagtggcttttccacattacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaaaaaaataacctccaaccatatcctccccaaagcctagtggcttttccacattacc 384
Query: 185 cagctgagacgaatatcatgtcaattttccacatgattagacaagactacccagaacaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagctgagacgaatatcatgtcaattttccacatgattagacaagactacccagaacaac 444
Query: 245 atagtttaaaatggtcttaacagcaaactttatttatttatttatttatttatttattta 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagtttaaaatggtctttacagcaaactttatttatttatttatttatttatttattta 504
Query: 305 tttatttatttatttttacttactctttttacatcctgttcactgcccctttcctgaaca 364
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttt------------ttacttactctttttacatcctgttcactgcccctttcctgaaca 552
Query: 365 ctccctcccataatcctttcccatctcccctctcattctcctctgggctaaaactttatt 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 553 ctccctcccataatcctttcccatctcccctcccattctcctctgggctaaaactttatt 612
Query: 425 agttttttttttttttaaacattaaaaaagtactcaaggacctttggtaaaaattgtctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agttttttttttttttaaacattaaaaaagtactcaaggacctttggtaaaaattgtctt 672
Query: 485 tgaatgatctgctctaagtacactttctacttcagaataagtaattcatgggggtcagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgaatgatctgctctaagtacactttctacttcagaataagtaattcatgggggtcagga 732
Query: 545 catttcctctctcaaacttgcccc-ctcccatttgatgttatcctttaatgctcctttca 603
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 733 catttcctctctcaaacttgccccacccccatttgatgttatcctttaatgctcctttca 792
Query: 604 tctatgaatttaattatcactactaaatagagggaagtcacccttcctatcattttaaat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tctatgaatttaattatcactactaaatagagggaagtcacccttcctatcattttaaat 852
Query: 664 ggaaactgtctta 676
|||||||||||||
Sbjct: 853 ggaaactgtctta 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_m01.g1 MSMg01no288_m01.g1 CHROMAT_FILE:
MSMg01no288_m01.g1 PHD_FILE: MSMg01no288_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
(657 letters)
>mm_chr16_40869362_40870415
Length = 1054
Score = 1212 bits (627), Expect = 0.0
Identities = 649/657 (98%), Gaps = 3/657 (0%)
Strand = Plus / Minus
Query: 1 agtaaattcagtaaaatatattagttttcttttgatccaccatggaattattattattat 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 854 agtaaattcagtaaaatatattagttttctcttgatccaccatggaattattattattat 795
Query: 61 gttttctgtgtttagttatgaagaccaaccaaagacaacacgtttgaatttaaaatctgt 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 794 gttttctgtgtttagttatgaagaccaaccaaagaca--acgtttgaatttaaaatctgt 737
Query: 121 gaaagaaccagtaggaagcttgctcctgtttctgtgtatgtatgagattgcccagggtgt 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 736 gaaagaaccagtaggaagcttgttcctgtttctgtgtatgtatgagattgccca-ggtgt 678
Query: 181 ccgggcagggctttggggaatagaactgatgccctgtaaaaactaaagaagctaacaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccgggcagggctttggggaatagaactgatgccctgtaaaaactaaagaagctaacaagg 618
Query: 241 cagtatcctggccaatttttcccatcactatcagaataaatagttgcatttgtataaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagtatcctggccaatttttcccatcactatcagaataaatagttgcatttgtataaaaa 558
Query: 301 ccaagtttccaaaggaagtaatttcatgtagaatatttacttccaaaatctcccttcatt 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 ccaagtttccaaaggaagtaatttcatgtagaatatttacttttaaaatctcccttcatt 498
Query: 361 caaactcagaattgtttagaataattagagggaaagaagatggtaaattgctgaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaactcagaattgtttagaataattagagggaaagaagatggtaaattgctgaaattta 438
Query: 421 gttttaatcactgtttttagaaaaatgatgtgattaagttaatgcaattgcacaagaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttttaatcactgtttttagaaaaatgatgtgattaagttaatgcaattgcacaagaaaa 378
Query: 481 cactggcttgtatttctaaagtcatgcagtaaacaatgaaaagagagagggatgaaggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cactggcttgtatttctaaagtcatgcagtaaacaatgaaaagagagagggatgaaggca 318
Query: 541 gatattatatgtgctataaatatgtaagcattgccaaggaggcttaaggtgagaatgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatattatatgtgctataaatatgtaagcattgccaaggaggcttaaggtgagaatgagc 258
Query: 601 cctaggttcaagaaatagccaaaatcgatatgagaaaatgtttcaatttgcaagttt 657
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 257 cctaggttcaagaaatagccaaaatcgataagagaaaatgtttcaatttgcaagttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1054
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1044
Effective search space: 675468
Effective search space used: 675468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
