BAC Information

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BAC

Clone NameMSMg01-288N16
Chromosome16 (Build37)
Map Location 45,293,895 - 45,443,164
singlet/doubletdoublet
Overlap geneCd200, LOC385905, Gm609
Upstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
Downstream geneLOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288N16.T7 (MSMg01no288_n16.b1)MSMg01-288N16.TJ (MSMg01no288_n16.g1)
ACCAG418565AG418566
length762762
length of high quality
(start - end)
322 (46 - 367)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no288_n16.b1 PHD_FILE: MSMg01no288_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:02 2005CHROMAT_FILE: MSMg01no288_n16.g1 PHD_FILE: MSMg01no288_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(45,293,895 - 45,294,210)(45,442,873 - 45,443,164)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGCTATTTGATTT
TTCTGGAGTCCACCTTCTTGAGTTCCTTATATATATTGGATACTAGTCTC
CTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAAACTATTTATGTTTT
ACTTAGTTATGTGGAGTTGACTTCTGATGTACAGTTACCAGAACTCATTT
GTTCGTTGCTTGTCACGCTAGTATTTTTTGACTGTATTGCACTAAACTGA
AGTACAGTATTTCTAAAGTGATTTGATAGATGTAATGCTACTGGAGAAAC
AAAATCTCTCTTTTATTTTTTCTTGGCCTCCCCGACAAAAGAACTTCAAA
ACAGTTTCAGAAGGGAGCACACCGACCATGTAATTAAGAGTTTGTAAGAA
AAATAACAAGGCAGCAAAATGAAAGAGAAATAACTAAGGGGAAAGAGAGC
CATGTCCTTTAAGTGATGGTCCAGGAAAGCAGTCAGGTTCAGCAATGGAG
GTGAACAAGTAGATGCAGAAGGGGTGTGTGAGTTTCAGAGAAACTGTGAG
AATTCAAAGAGATGAATAGAGAAAAGGGAAAGTTATGTTTTGTGGTGTAA
GAACTCAGAAAGTGGGCAGGTTGAGCAGAACACCAGCCTCCGACTTTTGT
GCAAGCTGTGCAAACAGCTGCATCTGGAAGGGGCTCTGGGAAGAATAAAT
GCATCATTGAAT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTAGGTGAGGAAAGACAGAGC
CACAACTTTGAACAGTGAACCACAACATGTCTCCATGAGTGTGAAGTGCT
GGGATGTATATAATATAATTTATAGATGCATGGAAGTTGAAACAGCAGTC
AGTTGACAGAGAAAAAGATATTAGAAGTTTTGTGACATCTGTCAGGATAT
ATCAGACAGGGATGTGTTTTCAGCATTTGTGTGTCATATAGATATTGGGG
GAAAGGCCACACCCCCTCACAGCATATAATTTGGTATGACTTGCTTTTGT
AGTAATTTTGCTTCCCTTTCTCTGCCTTACCCGCCCCTGAACTAGTAACT
GAGCTCCGGTCTGCTCCTGGCCCCGAAGATCTTCATAACCTTCTTTGTTC
AGCTGTGGGAAAGCCTGCCCCTGGAATCTCCGTTTACCCTTCACAAGTCA
CAGTGCAGGCACCACAAGAGTACTTTGCTCAGAACGCCAATGCCACGGTG
ACTGTCACTAAAATCTACAACATCTCTTTGAAAACTGCGAGGTCCCTGGG
TCTCCAGGACTTGGTTGTGTCAATGACTCACTCTGTAAGAAACGAAGAGA
AAATAGTCCGATTGCCAGTCAATCAAGGAGGTAAGTAAAAGTGACCATGA
AGTTAAAGGGGGCAACAGCTTAGTCTGCAAAATGCTATCAATGAAAGCAC
AGAGCCCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_n16.b1 MSMg01no288_n16.b1 CHROMAT_FILE:
MSMg01no288_n16.b1 PHD_FILE: MSMg01no288_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:02 2005
         (322 letters)



>mm_chr16_45293691_45294412
          Length = 722

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttcagctctgagccccattttttaatggggctatttgatttttctggagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttcagctctgagccccattttttaatggggctatttgatttttctggagt 264

                                                                       
Query: 65  ccaccttcttgagttccttatatatattggatactagtctcctatctgatttgggatagg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaccttcttgagttctttatatatattggatactagtctcctatctgatttgggatagg 324

                                                                       
Query: 125 taaagatcctttcccaaactatttatgttttacttagttatgtggagttgacttctgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaagatcctttcccaaactatttatgttttacttagttatgtggagttgacttctgatg 384

                                                                       
Query: 185 tacagttaccagaactcatttgttcgttgcttgtcacgctagtattttttgactgtattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacagttaccagaactcatttgttcgttgcttgtcacgctagtattttttgactgtattg 444

                                                                       
Query: 245 cactaaactgaagtacagtatttctaaagtgatttgatagatgtaatgctactggagaaa 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 cactaaactgaagtacagtatttctaaagtgatttgagagatgtaatgctactggagaaa 504

                           
Query: 305 caaaatctctctttta 320
           ||||||||||||||||
Sbjct: 505 caaaatctctctttta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no288_n16.g1 MSMg01no288_n16.g1 CHROMAT_FILE:
MSMg01no288_n16.g1 PHD_FILE: MSMg01no288_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:02 2005
         (292 letters)



>mm_chr16_45442673_45443364
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggtaggtgaggaaagacagagccacaactttgaacagtgaaccacaacatgtctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttaggtaggtgaggaaagacagagccacaactttgaacagtgaaccacaacatgtctcca 433

                                                                       
Query: 61  tgagtgtgaagtgctgggatgtatataatataatttatagatgcatggaagttgaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgagtgtgaagtgctgggatgtatataatataatttatagatgcatggaagttgaaacag 373

                                                                       
Query: 121 cagtcagttgacagagaaaaagatattagaagttttgtgacatctgtcaggatatatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagtcagttgacagagaaaaagatattagaagttttgtgacatctgtcaggatatatcag 313

                                                                       
Query: 181 acagggatgtgttttcagcatttgtgtgtcatatagatattgggggaaaggccacacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acagggatgtgttttcagcatttgtgtgtcatatagatattgggggaaaggccacacccc 253

                                                               
Query: 241 ctcacagcatataatttggtatgacttgcttttgtagtaattttgcttccct 292
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctcacagcagagaatttggtatgacttgcttttgtagtaattttgcttccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)