BAC Information

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BAC

Clone NameMSMg01-290E19
Chromosome16 (Build37)
Map Location 31,556,339 - 31,556,572
singlet/doubletsinglet
Overlap genenone
Upstream geneLsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E19.T7 (MSMg01no290_e19.b1)MSMg01-290E19.TJ (MSMg01no290_e19.g1)
ACCAG419616AG419617
length755754
length of high quality
(start - end)
711 (45 - 755)234 (130 - 363)
definitionCHROMAT_FILE: MSMg01no290_e19.b1 PHD_FILE: MSMg01no290_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:48 2005CHROMAT_FILE: MSMg01no290_e19.g1 PHD_FILE: MSMg01no290_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAATACTTTTCCACTCCATAGGCACTTGCACTTATGTACACATATG
GTCCCCACACAACTACAAATACACCCTTAAAGAATATTGATGTCAGGTGT
GGCAGCACATGCCTTTAATCCCAGCACTTGGGAAGGAGATGTGGGCAGAT
CTCACTAGCCTGATCTTCACAGCAAATTCTAGGCTAGCCTAGGCTATATA
GTGACACCTTGTCTCAAAGAACAAAACACAAAAGTCCTTCTCAACCTCTT
CCCACAGATTGAAGAGGAATGAATAGTTCTAAGCTCATTTTACAAGGCCA
AGATTATGTTATCAAAGCCATATAAAGGTGTAAGAAAACAAAAGCACAGG
ATAATAATATTCTTGATTGATATAAGTGCAAAAACCCTCAACAAAACACT
AACTGAATTCAACAACACATTCAAATGGTCACTCACACCATCAAGTGAGA
TTTACACCTAGAATTCAGGAATGGTTCAAACAATTTACAACTAACCAGGA
AAAAGTTATCCATCAAAACCTGTAAAATACTGATGAAGGGAACTGAAGAC
GAATACACACACAGAAATAGTCCACATTCATGGCTTAAAGGAATCACTAC
TATTATTAAAATGTCCATACCAATTAAAGGTGCTCTTAGATTCATGAAAT
CCCTGGTAAAAAGGACATTTTCTTTAATGACAATTTTTACAGAAACAATC
CTATA
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGCTCTTTGTACATGGGAGAG
TTAAGTTAAGTTTGTGGTGGGGCAACCGGATGCTTCAAATGCTCCCGTTT
AGAACACAATGAAAGTTGTTTGAGAAAAGTGGATGTTGTCTACATCTTTG
ACCCTAGACTTTGTGTAGATGGGGTTGCTTTGTGTAGACTAGGGTTGCTC
AGGGAATACATCATCAAGACCAAGAGTCAGTGGGAGGACTGGCCTGGGAG
CGGGCAACACAGTCAGGAGTGTGGATGATTTGGCAAAAATTCATCTAAAT
GGAAGGAATAATAAATTATTANTTACACCCCCCCCCGAATGGAAGCAGAG
TGGGTATCCCTTGAACCTGCCTGGATTTTGCTTTAATGAGTGTCTTAGGG
TTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTTATAAGGACA
ACATTTAATTGGGGCTGGCTTGCAGGTTCAGTCTATTATCATCAAGGCAT
CAAAGCATGGCAGTGCCCAAGCAAGTGTGGTGCAGGAGGAGCTGAGAGTC
CTACATCTTCCTCTGAAGGCCACTAGGAGAAGACTGGCTTACAGGCAGCT
AGGATGAGGGTCTTAAAGCCCATACCCACAGTGACACACCTACTCCAACA
AGGTCACACCTATTCCGACAATGCCGCACCTCATAATATTGCTACTCCCT
GGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e19.g1 MSMg01no290_e19.g1 CHROMAT_FILE:
MSMg01no290_e19.g1 PHD_FILE: MSMg01no290_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:48 2005
         (234 letters)



>mm_chr16_31556139_31556772
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcttcaaatgctcccgtttagaacacaatgaaagttgtttgagaaaagtggatgttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgcttcaaatgctcccgtttagaacacaatgaaagttgtttgagaaaagtggatgttgt 375

                                                                       
Query: 61  ctacatctttgaccctagactttgtgtagatggggttgctttgtgtagactagggttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctacatctttgaccctagactttgtgtagatggggttgctttgtgtagactagggttgct 315

                                                                       
Query: 121 cagggaatacatcatcaagaccaagagtcagtgggaggactggcctgggagcgggcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagggaatacatcatcaagaccaagagtcagtgggaggactggcctgggagcgggcaaca 255

                                                                 
Query: 181 cagtcaggagtgtggatgatttggcaaaaattcatctaaatggaaggaataata 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cagtcaggagtgtggatgatttggcaaaaattcatctaaatggaaggaataata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)