Query= MSMg01no291_a11.b1 MSMg01no291_a11.b1 CHROMAT_FILE:
MSMg01no291_a11.b1 PHD_FILE: MSMg01no291_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:43 2005
(565 letters)
>mm_chr16_9309036_9310000
Length = 965
Score = 955 bits (494), Expect = 0.0
Identities = 544/566 (96%), Gaps = 11/566 (1%)
Strand = Plus / Plus
Query: 5 gaattcatggatcacaatatagtaagtgatactggggattagttgtgcaaccacagaaaa 64
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcatggaacacaatatagtaagtgatactggggatcagttgtgcaaccacagaaaa 264
Query: 65 gtaaatttaccccagttagcaaataataattacatacaattgactaataatatataatat 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaatttactttagttagcaaataataattacatacaattgactaataatatataatat 324
Query: 125 aaataatgctatatattatactcattagacagtgcatactatacagtgtatattattcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataatgctatatattatactcattagacagtgcatactatacagtgtatattattcat 384
Query: 185 aatatacaatgttatatataatatatagtatatattcgaattgattaatagtaataattc 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 aatatacaatgttatatataatatatagtatatattctaattgattaatagtaataattc 444
Query: 245 actgtgtggtggtgtgtgcatgtgcaaaggtatgcacatgtatgtggaagtcagatatca 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 actgtgtggtggtgtgtgcatgtgcaagggtatgcacatgtatgtggaagtcagatatca 504
Query: 305 acttcaaggagccatctaccttgctttctgagacagagtctttcactgtttatgtatcca 364
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttcaaggagtcatccaccttgttttctgagacagagtctttcactgtttatgtatcca 564
Query: 365 tccccc-----atctgtcagtcataactattacatcacacaattatggtgataacattta 419
| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 t-----gttgtatctgtcagtcataactattacatcacacaattatggtggtaacattta 619
Query: 420 agatttatcttctaaagcaagtttggaataagcaacatagtattaccaactattgccaac 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 -gatttatcttctaaagcaagtttggaataagcaacatagtattaccaactattgccaac 678
Query: 480 acactgggctacagctccttagcatgtagttctcctgtttagttgaaatgctaaacactt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acactgggctacagctccttagcatgtagttctcctgtttagttgaaatgctaaacactt 738
Query: 540 agaagagaagaacagtagttatcaga 565
||||||||||||||||||||||||||
Sbjct: 739 agaagagaagaacagtagttatcaga 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_a11.g1 MSMg01no291_a11.g1 CHROMAT_FILE:
MSMg01no291_a11.g1 PHD_FILE: MSMg01no291_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:43 2005
(576 letters)
>mm_chr16_9470265_9471240
Length = 976
Score = 671 bits (347), Expect = 0.0
Identities = 359/363 (98%)
Strand = Plus / Minus
Query: 214 gaagaagacacctgctattgactactggcacacacatacatgtacaagtacacccaagtg 273
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 976 gaagaagacacctgctattgactactggcacacacatacatgtacgagtacacccaagtg 917
Query: 274 tggacacccccacacgcatacatacacatacaagcacaaataagtatgcataagtgtgca 333
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tggacacgcacacacgcatacatacacatacaagcacaaataagtatgcataagtgtgca 857
Query: 334 catgagcatacacacacaagtaggtttaagtgttcacacagacatacacatacacacaca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 catgagcatacacacacaagtaggtttaagtgttcacacagacatacacatacacacaca 797
Query: 394 cactcacatatgtacacacaaaattaactatttgaccaagaagactcccaggagacatga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cactcacatatgtacacacaaaattaactatttgaccaagaagactcccaggagacatga 737
Query: 454 atacttaagtgatagatagcatagtggcccggccctgaattgtgctcaccgcacacattc 513
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 736 atacttaagtgatagatagcatagtggcccggccctgaattgtgctcactgcacacattc 677
Query: 514 gactggactgcaggctgtgtctgcacttctacatttaattgaatcttctaacacttcttt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gactggactgcaggctgtgtctgcacttctacatttaattgaatcttctaacacttcttt 617
Query: 574 gag 576
|||
Sbjct: 616 gag 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
