BAC Information

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BAC

Clone NameMSMg01-291N07
Chromosome16 (Build37)
Map Location 86,168,741 - 86,169,210
singlet/doubletsinglet
Overlap genenone
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
Downstream geneLOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291N07.T7 (MSMg01no291_n07.b1)MSMg01-291N07.TJ (MSMg01no291_n07.g1)
ACCAG420719AG420720
length706776
length of high quality
(start - end)
477 (20 - 496)---
definitionCHROMAT_FILE: MSMg01no291_n07.b1 PHD_FILE: MSMg01no291_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:43 2005CHROMAT_FILE: MSMg01no291_n07.g1 PHD_FILE: MSMg01no291_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCTCTAATATCACGCTCTAG
TAAATGTTAGCTTTAACAGTCTATTAAATGCTACACAATATCAGTTTGCA
CCCCATCAAAATGGAGATCTTCCTCCATTGGGATAGTTTTGTTCCAGCAC
TGGCTTCCAGGCATCAAATCATGGAAAGGACAGAGTAGGGTGCAACAAAG
GGACCTACAGCAGTCTGAGAAACCGAGAGATTCTTTATCCAGGAGTTGAA
AGAAGCCATCATTGTTTGCATAGCAGATTTTAAAATTAAGGAATGAAAGT
TTTCTTATGACTCATACCTAAGTACTTTCCATGTAACATTTGTAGTTTAA
AGAAATTTCACAAACTGAATTACATGCTAACATGTACCTCTTGCCCCCCC
CTCATGGTGTCAAGGTAAGAAGGTTGATTTTACGGCTAACATAAATTTCA
TGTCACAGTATTGTTTTAAATAAAATTATGTATTTCATATTGCCAAGAAT
AGAATCATATTAAATTATGAATGCATTAAATTCTAGGATTCATTGGGAAG
AACTGTTTAGGAGTTAGGAAGAATCATATCACAGGCAGGTAGAGAATGCT
AGCCACATGGACTTGCAGGCTGCCTTGGAAAAGCAAATGAAGACATTTGT
GTAAAGCTGACAATGGCTGCCGATTCTGTAATCTTTCAGGATAGCAGAGT
ATTAGC
GGGGCGTGGGTGGGCCGCTGTTCTTAGCTCCATGTGACCNNNCAAATTTT
NNCCCACGAAGACAXXXXXXXXXXXXXXXXXXXXXXXXTTCCGGAGGAGA
GGNGAANNANAGAAGTTCCAAGAGAAAGGGAGNNGAGGAAAANGAAGGGN
AGAGAAGNANNGGAAAATTGTTCCCAAAAAAAGGGGGGAGGGAAANGNAA
ANNAAAANAANNNTGAGAANNNANTCANANNAGNNAGAAGGGNNAAGAAN
AAAAANNCAGGGGANAGNAGAAGGTGGNGGGGAAGNGGAGAAAGAGGAAN
ANTTTTNANTGGGGGGGGGATTGGAGGNTTGTANNAATATTNTGGAGATT
AGTNTGGNGGNNNNTTATATTTTTGTATANAGNAAGANGGGAGGAAGGAG
NAAAANATATTTTGTGTACACACCCAGAAGATGCCACAACTGGTAAGAAG
GAGACATGCTCCACCACGAACATAAAAAAAAAAAATATAATAGGGAGAGG
CGGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGA
GGGACATCTACACAATGGAGCACTACGCAGGGATGAAAAAGAAGGAAATT
ACGAAATTCCTGGCAAAAAGAAAGGAACGGAAAGGCAACATCCAGAGAGA
GGGAAGAAAGTCAAAAAGGAAATCAAAAGATAGGGAGTCAATGAAAAGAG
GAAAATAGAGATAAACCAAAAAAACGAAGAAAAAAAGTAACAAATGCAAA
AAAAAATGGAAAGAGAAGAAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_n07.b1 MSMg01no291_n07.b1 CHROMAT_FILE:
MSMg01no291_n07.b1 PHD_FILE: MSMg01no291_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:43 2005
         (477 letters)



>mm_chr16_86168534_86169410
          Length = 877

 Score =  717 bits (371), Expect = 0.0
 Identities = 445/475 (93%), Gaps = 10/475 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctctaatatcacgctctagtaaatgttagctttaacagtctattaaatgctacac 67
           |||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 208 gaattcactaaaatcaagctctagtaaatgttagctttaacagtccattaaatgctacac 267

                                                                       
Query: 68  aatatcagtttgcaccccatcaaaatggagatcttcctccattgggatagttttgttcca 127
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatatcagtttgcagcccatcaaaatggagatcttcctccattgggatagttttgttcca 327

                                                                       
Query: 128 gcactggcttccaggcatcaaatcatggaaaggacagagtagggtgcaacaaagggacct 187
           |||||| |||||||||||||||| ||||||||||||||||||| |||| |||| ||| ||
Sbjct: 328 gcactgccttccaggcatcaaataatggaaaggacagagtaggctgcaccaaaaggatct 387

                                                                       
Query: 188 acagcagtctgagaaaccgagagattctttatccaggagttgaaagaagccatcattgtt 247
           ||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 388 acagcagtctgagaaactgagagattctttatccaggagttggaggaagacatcattgtt 447

                                                                       
Query: 248 tgcatagcagattttaaaattaaggaatgaaagttttcttatgactcatacctaagtact 307
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 448 tgcatagcagattttaaaatgaaggaatgaaagttttcatatgactcatacctaagtact 507

                                                                       
Query: 308 ttccatgtaacatttgtagtttaaagaaatttcacaaactgaattacatgctaacatgta 367
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttccatgtaacgtttgtagtttaaagaaatttcacaaactgaattacatgctaacatgta 567

                                                                       
Query: 368 cctcttgcccccccc-----tcatggtgtcaaggtaagaaggttgattttacggctaaca 422
           ||||||| ||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cctcttggcc-----agggttcatggtgtcaaggtaagaaggttgattttacggctaaca 622

                                                                  
Query: 423 taaatttcatgtcacagtattgttttaaataaaattatgtatttcatattgccaa 477
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 taaatttcatgtcacagtattgttttaaataaaattatatatttcatattgccaa 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)