BAC Information

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BAC

Clone NameMSMg01-293C02
Chromosome16 (Build37)
Map Location 13,224,370 - 13,243,231
singlet/doubletdoublet
Overlap genenone
Upstream gene2700045P11Rik, EG622509, LOC622553, Ercc4
Downstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C02.T7 (MSMg01no293_c02.b1)MSMg01-293C02.TJ (MSMg01no293_c02.g1)
ACCAG421660AG421661
length715721
length of high quality
(start - end)		319 (42 - 360)306 (71 - 376)
definitionCHROMAT_FILE: MSMg01no293_c02.b1 PHD_FILE: MSMg01no293_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005CHROMAT_FILE: MSMg01no293_c02.g1 PHD_FILE: MSMg01no293_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,224,370 - 13,224,685)(13,242,936 - 13,243,231)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTCAAGCTATTTGCCTACTACAAGTTGTAAGCCAGCTATAGGCCCAGT
ACCTATTAACTCTGTACCTTCCCACCAGCCTCTGGAGGTTGAAAGTACTT
CCCGTCTTTACTTCACAGAAAGGAGACAGAGCCATAGAGTAGCTGAGAAA
CTCGGACCCTGAGTTAGTGATCTTACCCTTCTCACGAGGAGACCTCAATG
CAGCTGAGAAGTTGGTGGTTTTCTTAGAGCACCTAATGGCACATGGTACA
CACCAGTAAAACAGTAAGAGTTTGAGAGCAGGGGATATGTGTGTGGCACC
TTGATCAGGGGTTCTTCAATACGACTCATCTAGAAGTATAACCTCAGGGG
TCTGCCTTTGCCTTCCACCTTGTTTGAGACAGAGTTTCTTGTTTCCTACC
TCAAATGCCTGGCTAGCTGGCCTGTAGCCTCTGGGGCCTGTCTCTCGTAG
GGACACTGGGATTACAGATGTGCATGACCATGTCTTGCTTTATTGTGAGT
TCAAACTCACAGCTTCATGTTTGCACAGCAGGCAGCTTGTCCACTGAACT
ATCTTCCCTGCCCTCAGCTTGGGTATCTGAATATGGGGTCAGGAGTTTGT
GCCATCTTGGTTCCAGAGGCCCCACTGCTGGTGTATAATGACAGGCAAGT
TGCAATACCCAGAAN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGAACCCTGCTGCATGTGTAACAAGGAAC
ATTGTGAGTACGACATTATTTGTAGTCTAAGAACGAGTGACATGCCACAG
CAATGTGCAGAGCCTCATGGAAGCAGGCAGAGCTTGGGCATGAGGGTAGA
GGCATACAAAGGCAAATCCAGAGCAGGATCAAAGTAAGGAGGGTCAAAAA
GAAATGGCCAGTTTTTATTCTTTTAAAAAATGGAGGAGGATATTTTGAGA
AGCATTGTAGAAGTCAAGAGAGAAAGGATGTTCAGGGGACTTAAAAGGGA
AGATTCTTAAATTTTATTTTTGCTCCGCCCTCTTTTTTTTTATTTTCTTC
TGTGGCAGAGTCTCACAACGCCCCACAGACTGAAATTGAACTTGGAACGG
TGTTGCTTCTGTCTCCTGAGTGCTGGGACTACAGTAGCATATGGACAAGA
CTCCAGATTCCCAGACCTTGTCAAGTTGTCCACACATTCAGGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATCCATGTGTTTTTGCCTATTTGAGAGCGTG
TCTGCATTTCTATACATAGTTCCACATATGGGGGTGCGCCCAACCATTTG
CATGTATGCATCTACGCATATACCCATGTCGTTACGTGTGTCCCGATACC
ACAATCTGTATCTTCCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c02.b1 MSMg01no293_c02.b1 CHROMAT_FILE:
MSMg01no293_c02.b1 PHD_FILE: MSMg01no293_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:26 2005
         (319 letters)



>mm_chr16_13224167_13224885
          Length = 719

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtcaagctatttgcctactacaagttgtaagccagctataggcccagtacct 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtcaagctatttgcctactacaagctgtaagccagctataggcccagtacct 263

                                                                       
Query: 64  attaactctgtaccttcccaccagcctctggaggttgaaagtacttcccgtctttacttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 attaactctgtaccttcccaccagcctctggaggttgaaagtacttcccatctttacttc 323

                                                                       
Query: 124 acagaaaggagacagagccatagagtagctgagaaactcggaccctgagttagtgatctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagaaaggagacagagccatagagtagctgagaaactcggaccctgagttagtgatctt 383

                                                                       
Query: 184 acccttctcacgaggagacctcaatgcagctgagaagttggtggttttcttagagcacct 243
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 384 acccttctcacgaggagacctcagtgcagctgagaagttggtggtttccttagagcacct 443

                                                                       
Query: 244 aatggcacatggtacacaccagtaaaacagtaagagtttgagagcaggggatatgtgtgt 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 aatggcacatggtacacaccagtaaaacagtaagagtttgagagcagggggtatgtgtgt 503

                           
Query: 304 ggcaccttgatcaggg 319
           ||||||||||||||||
Sbjct: 504 ggcaccttgatcaggg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no293_c02.g1 MSMg01no293_c02.g1 CHROMAT_FILE:
MSMg01no293_c02.g1 PHD_FILE: MSMg01no293_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:26 2005
         (306 letters)



>mm_chr16_13242736_13243441
          Length = 706

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaccctgctgcatgtgtaacaaggaacattgtgagtacgacattatttgtagtctaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 aggaaccctgctgcatgtgtaacaaggaacactgtgagtacgacattatttgtagtctaa 437

                                                                       
Query: 61  gaacgagtgacatgccacagcaatgtgcagagcctcatggaagcaggcagagcttgggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaacgagtgacatgccacagcaatgtgcagagcctcatggaagcaggcagagcttgggca 377

                                                                       
Query: 121 tgagggtagaggcatacaaaggcaaatccagagcaggatcaaagtaaggagggtcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgagggtagaggcatacaaaggcaaatccagagcaggatcaaagtaaggagggtcaaaaa 317

                                                                       
Query: 181 gaaatggccagtttttattcttttaaaaaatggaggaggatattttgagaagcattgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaaatggccagtttttattcttttaaaaaatggaggaggatattttgagaagcattgtag 257

                                                                   
Query: 241 aagtcaagagagaaaggatgttcaggggacttaaaagggaagattcttaaatttta 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagtcaagagagaaaggatgttcaggggacttaaaagggaagattcttaaatttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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