BAC Information

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BAC

Clone NameMSMg01-294E02
Chromosome16 (Build37)
Map Location 65,205,174 - 65,205,475
singlet/doubletsinglet
Overlap genenone
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E02.T7 (MSMg01no294_e02.b1)MSMg01-294E02.TJ (MSMg01no294_e02.g1)
ACCAG422476AG422477
length722722
length of high quality
(start - end)
323 (43 - 365)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no294_e02.b1 PHD_FILE: MSMg01no294_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:54 2005CHROMAT_FILE: MSMg01no294_e02.g1 PHD_FILE: MSMg01no294_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAAACCTGATATACAGGTTCAATGTAGTATCTGGATATAAAATTAAC
TTAAACAAGTCAATGCTTTTGTCTACACAAAGAATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAGTAATATAAATTA
ATTTGGTGTGATCTAACTAAAGGAAGCGAAAGATCTCTATGACAAGAACT
TCAAGTCTCTGAAGAAAGAAATTAAAGATCTCAGAAGTTGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCT
AAAAGCAATCTATTATATTCCATGCACTCCCCAACAAAATTCCAACTCAA
TTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAA
AAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGCTG
GAATCACCATGCCTGGCCTAAAGCTGTACTACAGAGCAATTGTGATAAAA
ACTGCATGGTACTGGTATACTGACAGACAAGTAGACCAATGGAATAGAAT
TGAAGATCCAGAAATGAACCCACACACCTATGGTCATTTGATCTTTGACA
AGGGAGCTAAAACCATCCAGTGGAAAATAGAGAGCATTTTCAACAAATGG
TGCTGGCACAACTGGCAGTTAT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGTTTTAGACATGAATAAGCAAAAA
ATTATCTATTCATAAAAACTGCATAATAGCAAAAGGGTCTCCTTCACAAT
GCAAGCAAATATTTACTTGTATTTCCTGTTTCAACAAATGTCATTCATGT
CAACATTAATTGAGAAGGAAATATATCTTTATGTACATAAATCTTCCTTT
TTAAAAGTATTTACTTATGCACTGAATACTCTCTTTGGTCAGAAAAAGCA
GAGCTGCACAATGAAAGGCAGATATCTCTCAATGGGAAAGAGTTGGTTGT
GATATATATATCTATTGAGCTCTCGCCAAATGAGCCACCAATGGCCAAGA
GAGCTTGCAGGGACTGCACTGAGAATTTTTCTCCATCCAGTCCTGTTTTT
GCCTGAGGAGATGACATTTATTAAGGCAAATAGGCTATAAATTCAGAATA
TACTTCTTCCCAAGCTTACAATTTTTGCTTGTTGTTTTGCTAGCTCATGT
AAAGTGAAATAAATTTTAAAAACTAAAAAGTATACATTCCATTATGTCAT
ATTTCCTTTTGGCTCTACTTCCATTGTGTATTTCCCAATCTTCCTGCTCC
TCTGTCCCTTTTGTCCTCATTCCTTTGCAATACTATAAGGAAAGGGGAAG
TTCGTGTACACTTTATTACGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e02.g1 MSMg01no294_e02.g1 CHROMAT_FILE:
MSMg01no294_e02.g1 PHD_FILE: MSMg01no294_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:54 2005
         (291 letters)



>mm_chr16_65205003_65205693
          Length = 691

 Score =  514 bits (266), Expect = e-150
 Identities = 287/302 (95%), Gaps = 13/302 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgttttagacatgaataagcaaaaaattatctattcataaaaactgcataatagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttgttttagacatgaataagcaaaaaattatctattcataaaaactgcataatagcaaa 414

                                                                       
Query: 61  agggtctccttcacaatgcaagcaaatatttacttgtatttcctgtttcaacaaatgtca 120
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 413 agggtctccttcacaatgcaagcaaatatttacttgcatttcctgtttcaacaaatatca 354

                                                                       
Query: 121 ttcatgtcaacattaattgagaaggaaatatatctttatgtacataaatcttccttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttcatgtcaacattaattgagaaggaaatatatctttatgtacataaatcttccttttta 294

                                                                       
Query: 181 aaagtatttacttatgcactgaatactctctttggtcagaaaaagcagagctgcacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aaagtatttacttatgcactgaatactctctttggtcagaaaaagcagagctgcacaatg 234

                                                                       
Query: 241 aaaggcagatatctctcaatgggaaagagttgg-------------ttgtgatatatata 287
           |||||||||||||||||||||||||||||||||             ||||||||||||||
Sbjct: 233 aaaggcagatatctctcaatgggaaagagttggcagtgccaatatgttgtgatatatata 174

             
Query: 288 tc 289
           ||
Sbjct: 173 tc 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)