BAC Information

Click to search

BAC

Clone NameMSMg01-294K08
Chromosome16 (Build37)
Map Location 6,770,318 - 6,770,632
singlet/doubletsinglet
Overlap geneA2bp1
Upstream geneLOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K08.T7 (MSMg01no294_k08.b1)MSMg01-294K08.TJ (MSMg01no294_k08.g1)
ACCAG422764AG422765
length744733
length of high quality
(start - end)
326 (41 - 366)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no294_k08.b1 PHD_FILE: MSMg01no294_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:22 2005CHROMAT_FILE: MSMg01no294_k08.g1 PHD_FILE: MSMg01no294_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCCAGCCAGGGTTTGCNCATCTCTCTCTTCTATTAAAAAAAAAAAAAAC
CTGGAGAGAATAACCAGTCTATCTCTCCATTTCCCTAAAAGAGCTTCCTA
ACAGACCATTAAAACAAGAGCTAGCAATAGAGAGCTTTCCCATGACTTTG
GATTCTGGTCACAGAACAAAGGGGATTCAAAATGAAGAAAGCACATTATT
GTGCCCATTATGTGAACAAAGTGTCTGCTTCCCCCCCTCCCCCACCCCAA
ACATCCAAGTATAACTTCAGCTCTGGGTTTGGCTCGACATCATTAGGAAG
GCATATACCAACATGGTTTTCTACTCTCTCGCCCCCCCCCCCCCCATCTA
GCTTCATTGAAAGCGAAGCAGAACCGCTACCTAAATAAAAAGAAAAAACC
TAGCTCAACATTGAAAAGGTGCATCCTGTATTTTGTTGTTAAATTTGTGG
GCTGAAGAGGCACTCCCTGTGGCTTGCTGCTCCCACCAATACCCTAAGCC
TCCAGACTTCCCTCATCAAGGGCTGATATCATTTCAACAGCTGTCAAGAA
CAGCTAAAGTGCACTTAGGCCTATTTGTTAAATTCCTAAGGGGGGAGGTA
GATTGGTGAAATTCCAACAGTAATTAAACCACATACGTCCTTTACCGCTT
GTTCCTCATCCCTCTCGCCTGTATAATCTCTCTGTCTCGCATAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCTTGTTTTTATATCCCCACCCCGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGCCCATAGCAGAAATATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCTCAAAGAAACTCACACAATATGTATTCACTGATAAGCGGA
TATTACCCCCCAACCTAGGATACCCTAGATATAAGATACAATTTTGCCTA
AACACCTGACCACTCAAGAAGAATGAAGACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k08.b1 MSMg01no294_k08.b1 CHROMAT_FILE:
MSMg01no294_k08.b1 PHD_FILE: MSMg01no294_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:22 2005
         (326 letters)



>mm_chr16_6770111_6770832
          Length = 722

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%), Gaps = 4/319 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccagccagggtttgcncatctctctcttctattaaaaaaaaaaaaaacctggaga 67
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 gaattccagccagggtttgc-catctctctcttctattaaaaaaaaaaaaaacct-gaga 465

                                                                       
Query: 68  gaataaccagtctatctctccatttccctaaaagagcttcctaacagaccattaaaacaa 127
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaataaccagtc-atctct-catttccctaaaagagcttcctaacagaccattaaaacaa 407

                                                                       
Query: 128 gagctagcaatagagagctttcccatgactttggattctggtcacagaacaaaggggatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagctagcaatagagagctttcccatgactttggattctggtcacagaacaaaggggatt 347

                                                                       
Query: 188 caaaatgaagaaagcacattattgtgcccattatgtgaacaaagtgtctgcttccccccc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caaaatgaagaaagcacattattgtgcccattatgtgaacaaagtgtctgcttccccccc 287

                                                                       
Query: 248 tcccccaccccaaacatccaagtataacttcagctctgggtttggctcgacatcattagg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcccccaccccaaacatccaagtataacttcagctctgggtttggctcgacatcattagg 227

                              
Query: 308 aaggcatataccaacatgg 326
           |||||||||||||||||||
Sbjct: 226 aaggcatataccaacatgg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 722
Length adjustment: 9
Effective length of query: 317
Effective length of database: 713
Effective search space:   226021
Effective search space used:   226021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)