BAC Information

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BAC

Clone NameMSMg01-295C12
Chromosome16 (Build37)
Map Location 10,351,520 - 10,351,804
singlet/doubletsinglet
Overlap genenone
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2
Downstream geneTekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295C12.T7 (MSMg01no295_c12.b1)MSMg01-295C12.TJ (MSMg01no295_c12.g1)
ACCAG423131AG423132
length744739
length of high quality
(start - end)
285 (70 - 354)193 (126 - 318)
definitionCHROMAT_FILE: MSMg01no295_c12.b1 PHD_FILE: MSMg01no295_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:00 2005CHROMAT_FILE: MSMg01no295_c12.g1 PHD_FILE: MSMg01no295_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTTTTCGGCACGTCCGAGGTCACATGATACCAAAGAAGGTG
CAACCAGATCCTGGATTTCCAGCCCCCATCCCGTATCAGACCAGGAATGT
TCTGTATGTCTTCAGGGGAGGAACGGACAGAAGAGTCTGCAGCAGCCCCT
AGGAATTTCAATTGTCTTTTGACCCCTCCACCCAGCCTGCAGGAGGGGGC
ACTCGTCTAGAGCACTTTCAGATACACAGGAGCAAACAGCTGAGACTTTG
TGTGATGGTGACGCGTTTTTTTTTCAGGGCCAGGCTAAATGACGTGGGCA
TTTTATTCGTGAATTCCGCAGCCANACCCCCTGGGAAGTGGGGAGGATAT
TTGGAGTACCCCAGGCAAAAAAAACAAAAATCATCCTCGGTGTGGCGCGG
TGGCCAAGTGTCATCACCTCTCTGTGCCTCTGTTTTCTCAACTGTAAAGT
GAGAAAACACCCATCTCATGGCGTGAACATGGGGTTACTTCACTGTCTGC
CCTTTATCACCGTTCATGGCTAAGGTTTCGAGAGGATGGGGAAACGCTTT
CTTATGTTATCCAGCGGATACGGCTAAGGCGTCCTGCTCTTTCATACAGT
CTGTAGGGGATCACTTTGCCAGTGGCTTTGTTATCAATACCTTTTCTTTT
ATTTGGCAAGCTGCAGCCCCGTCTTTCCTGGTATTTGAGTTTTT
CTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGCCTTTAACAAGTGAGAA
AATGTTGTTGGCTAAAATTGCACGGAGGAGCTCAGAACCTCTTTTTCCCT
AAGAGGGGCTTCACACAGCAGTCTAAACTGCTGGGTGTGGTCATACAGGT
CTGAAATCCCAGCTGTTCAAGAACCTGGGGCAGGAGGATCATGAATTTGA
GGGTAACCTAGGCTTTGTAGTGAGACTCTGTCTCGAATGCACAAAGCAAT
AGCAACAAAACTAAGATTTTTTCTTGGNAGAAGAATCCTGGAANANNGGC
NNNGAGTGGATGAGTTCCAGNGACGANAACGCCAGTCTGGGATTGNATAA
CANAAGGNACNACCAAGAAAGGGAATNTAAAGCGGGGGGGGGGGGGGAGG
CAATCCCCGAGTTCTGTCCCTAGAACTGCTAGACAAAAGCAATCAAAACT
ACTCGCCACAACTCCTCTGCACGAAAGATAACTACCCGACTCTTATAGTT
CCAACTTCCTGCCATTGAGGAAAAGCTAAAGGGGGCTTATGGCTGCCAAA
GGCTGGTTTATACAGGAATGAACTGGCGTATAGCTGCAATTTATATATCT
TTGAAACCACTCTGGAACACCTGCCATTATACCTTGTATCTCCTACATTT
GGCCAACCACATGGTATGATGCCTCACTTTGACCGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_c12.b1 MSMg01no295_c12.b1 CHROMAT_FILE:
MSMg01no295_c12.b1 PHD_FILE: MSMg01no295_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:00 2005
         (285 letters)



>mm_chr16_10351320_10352004
          Length = 685

 Score =  482 bits (249), Expect = e-140
 Identities = 276/289 (95%), Gaps = 8/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtccgaggtcacatgataccaaagaaggtgcaaccagatcctggatttccagcccccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 201 cgtccgaggtcacatgataccaaagaaggtgcaaccagatcctggaagcccagcccccat 260

                                                                       
Query: 61  cccgtatcagaccaggaatgttctgtatgtcttcaggggaggaacggacagaagagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccgtatcagaccaggaatgttctgtatgtcttcaggggaggaacggacagaagagtctg 320

                                                                       
Query: 121 cagcagcccctaggaatttcaattgtcttttgacccctccacccagcctgcaggaggggg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cagcagcccctaggaatttcaattgtcttctgacccctccacccagcctgcaggaggggg 380

                                                                       
Query: 181 cactcgtctagagcactttcagatacacaggagcaaacagctgagactttgtgtgatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactcgtctagagcactttcagatacacaggagcaaacagctgagactttgtgtgatggt 440

                                                            
Query: 241 gacgcgtt----tttttttcagggccaggctaaatgacgtgggcatttt 285
           |||||| |    |||    ||||||||||||||||||||||||||||||
Sbjct: 441 gacgcgctgacattt----cagggccaggctaaatgacgtgggcatttt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)