BAC Information

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BAC

Clone NameMSMg01-295I03
Chromosome16 (Build37)
Map Location 52,977,505 - 52,977,792
singlet/doubletsinglet
Overlap geneLOC667895
Upstream geneCblb, Alcam, LOC100043430
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I03.T7 (MSMg01no295_i03.b1)MSMg01-295I03.TJ (MSMg01no295_i03.g1)
ACCAG423383AG423384
length718730
length of high quality
(start - end)
316 (57 - 372)288 (85 - 372)
definitionCHROMAT_FILE: MSMg01no295_i03.b1 PHD_FILE: MSMg01no295_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005CHROMAT_FILE: MSMg01no295_i03.g1 PHD_FILE: MSMg01no295_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAANAAAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCAACTGAGGAATAACGAATGGCTGAGAAACACC
TGAAAAATTGTTCAACTTCCTTAATCATAAGGGAAATGCAAGTCATAACA
ACACTGAGATTCCACCTCATGCCAGTCAAAATGGATAAGTTCAAAAATTC
AGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTGCTCC
ATTGTTGGTGGGATTGCAAGCTGGTACAAACACTCTGGAAATCAGTCTGG
TGATTCCTCAGAAAATTGGACATAGTACTACCAGAAGATCCAGCAATACC
TTTCCTGGGCATATATCCATATTATGTTCCACCTGATAATAAGAACACAT
GCTCCACTATGTTCATGGCAGCCTTACCCATAATAAACAGAAGCTGGAAA
TAACCCAGATGTCCTTCAACAGAGGAATGGATACATAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGCTATTAAAATCAATAAATTTATGAGAT
TCTTAGGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACC
CAGTCACAAAAGAACTCACATGATATGTACTCACTGATAAGTGGATAGAA
GCCCAGAAACAAACACATGAAACTCAAGAAGAAGGAAGGTGATTAACTTC
TAATAATCTATTTGTATN
NNAATATACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTACAATAATGACA
ATTTTGTAATATCATGCAAACTAACACTTACCATCTAAGAAAGTACCTCA
CATCACATGATAAAAACTACAAGTGGGTTACAAAATATTTAAATTTAACA
TGAATAAGGAAATTGATTTACATGGAAGTGAAATTTCTAGTCACAATTTT
TGGATTTGTACTTGACAGTCACAGCATATGCACTCTACTCACACCACTCT
CCTTTGAGCTAGATGAGTACTCCTTAGTCATTCAGTGTTCCCCCTAAGAG
AAACTGAGCTAGTCTACTTATTACGTGCCATCACTACACCTCTAATTCTA
TGCTACGCTTGGATTATACTACCCCCACATGTCAGCTTTAAAATAATTAT
TTCTCTGTGAAATTCTATCTCTTTAATATTTATGTTTCTTTTTTGCACCT
ACACAATTCTTCATGAAGTATTTCCTGGTACTACTTCAACGTGATCATCC
TTTTTATTTTGATTTGTTTTGCATGCACCTTTTCTTATGTCTAAAATCTT
AAAATTAAATATATTCTTTCATAGTGAATACAGAGAGGAAATTTACTACT
TAAATCTTCAGTACGAAATGTTGAATTGATATACTGATATATGATCATAT
ATGAATTCACGTTCAAAACAGTGTGAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i03.g1 MSMg01no295_i03.g1 CHROMAT_FILE:
MSMg01no295_i03.g1 PHD_FILE: MSMg01no295_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:28 2005
         (288 letters)



>mm_chr16_52977305_52977993
          Length = 689

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttacaataatgacaattttgtaatatcatgcaaactaacacttaccatctaagaaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 ctttacaataatgacaattttgtaatatcatgcaaactaacacttaccatcttagaaagt 429

                                                                       
Query: 61  acctcacatcacatgataaaaactacaagtgggttacaaaatatttaaatttaacatgaa 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 428 acctcacatcacatgataaaaactacaagtggtttacaaaatatttaaatttaatatgaa 369

                                                                       
Query: 121 taaggaaattgatttacatggaagtgaaatttctagtcacaatttttggatttgtacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaggaaattgatttacatggaagtgaaatttctagtcacaatttttggatttgtacttg 309

                                                                       
Query: 181 acagtcacagcatatgcactctactcacaccactctcctttgagctagatgagtactcct 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 308 acagtcacagcatatgcactctactcacatcactctcctttgagctagatgagtattcct 249

                                                           
Query: 241 tagtcattcagtgtt-ccccctaagagaaactgagctagtctacttat 287
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 tagtcattcagtgtttccccctaagagaaactgagctagtctacttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)