Query= MSMg01no297_i01.b1 MSMg01no297_i01.b1 CHROMAT_FILE:
MSMg01no297_i01.b1 PHD_FILE: MSMg01no297_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:58 2005
(652 letters)
>mm_chr16_89209638_89210688
Length = 1051
Score = 837 bits (433), Expect = 0.0
Identities = 463/473 (97%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 180 acttaaaatttattcatgtagcattatacaatctgagcaagttaaatatattaaaacata 239
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 1049 acttaaaatttattcatgtatcattatacagtctgagcaagttaaatatattaaaacata 990
Query: 240 tggatgtacatgcatgtagatatatgcatataacaacaattgagaaagaaaggctataaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 989 tggatgtacatgcatgtagatatatgcatataacaacaattgagaaagaaagactataaa 930
Query: 300 tttgtaggagaagaaggatgggtatgtgggagggtttatagggatgaaaatggagggtaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tttgtaggagaagaaggatgggtatgtgggagggtttatagggatgaaaatggagggtaa 870
Query: 360 aatggtcatagtataatcatagtatagtatataatcacactatagtcacagtatagtctc 419
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct: 869 aatggtcatagtataatcatagtataatatacaatcacactatagtcacagtataatctc 810
Query: 420 aagatgaaagaaacaaaaaatattgaaaaatagaaccagtcggtgagtttgacagccaaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aagatgaaagaaacaaaaaatattgaaaaatagaaccagtcggtgagtttgacagccaag 750
Query: 480 gagacacatctatagttgaggtataagcactcaaacatagggactgaataatttcgggag 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 749 gagacacatctatagttgaggtataagcactcaaacataggaactgaataatttcgggag 690
Query: 540 gattctagttttactttatagagcctggacccataaataaccccatattaagtaggaaag 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gcttctagttttactttatagagcctggacccataaataaccccatattaagtaggaaag 630
Query: 600 gaagagctcaaagaagcatactttaataggctataatgctatatgtaaagaac 652
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 629 gaagagctcaaagaagcatactttaataggcta-aatgctatatgtaaagaac 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_i01.g1 MSMg01no297_i01.g1 CHROMAT_FILE:
MSMg01no297_i01.g1 PHD_FILE: MSMg01no297_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:58 2005
(546 letters)
>mm_chr16_89030802_89031748
Length = 947
Score = 996 bits (515), Expect = 0.0
Identities = 539/547 (98%), Gaps = 1/547 (0%)
Strand = Plus / Plus
Query: 1 actgaaaaataaaacta-cctggattttgtgtgaatttattaggaggattcattatcaca 59
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaaaataaaactaccctggcttttgtgtgaatttattaggaggattcattatcaca 260
Query: 60 caaaaccaaatgggatctgagacaattacaaaacattcaaagctcatcatatgctgtcaa 119
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caaaaccaaatgggagctgagacaattacaaaacagtcaaagctcatcatatgctgtcaa 320
Query: 120 aaacagaataattctggcactactagttaaagaaagagtagttgactgaagtaatttgat 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aaacagaataattctggcactactagttaaagaaagagtagttgacttaagtaatttgat 380
Query: 180 caatgtaaatacatgatggtaaactcattgtatagtgctgtacataaaatataattctag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgtaaatacatgatggtaaactcattgtatagtgctgtacataaaatataattctag 440
Query: 240 tattcattaaagtattgaataatcaccgtgcacttatttgtaaaaataaatggagaaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattcattaaagtattgaataatcaccgtgcacttatttgtaaaaataaatggagaaata 500
Query: 300 agatcttatgcaataaataaaaatgatttgctttatagaaattaaattcaaatgggatta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatcttatgcaataaataaaaatgatttgctttatagaaattaaattcaaatgggatta 560
Query: 360 gtctcatctgtataacaataaaacgtaatgcatttagctcatagttcattttctaaaata 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcatctgtataacaataaaacttaatgcatttagctcatagttcattttctaaaata 620
Query: 420 ctaattagttagaatattattaccatcaagggaatgaaaaatatgtttgatttcagaaaa 479
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ctaattagttggaatattattaccatcaagggtatgaaaaatatgtttgatttcagaaaa 680
Query: 480 ggaaaagaattgaaccctgaagcagaaaatgaatttgcattgcaagtgaagaaaaattca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaaagaattgaaccctgaagcagaaaatgaatttgcattgcaagtgaagaaaaattca 740
Query: 540 tgattca 546
|||||||
Sbjct: 741 tgattca 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
