Query= MSMg01no299_p03.b1 MSMg01no299_p03.b1 CHROMAT_FILE:
MSMg01no299_p03.b1 PHD_FILE: MSMg01no299_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:00 2005
(602 letters)
>mm_chr16_43792906_43793908
Length = 1003
Score = 986 bits (510), Expect = 0.0
Identities = 569/600 (94%), Gaps = 23/600 (3%)
Strand = Plus / Plus
Query: 5 gaattctaaacagcaaagtctcttcactaataatctctcactggtaccatgtatattctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacagcaaagtctcttcactaataatctctcactggtaccatgtatattctt 264
Query: 65 actcttaattttaaaaaattaaatctcttctacctactgctttcgaccaataaacactta 124
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 265 actcttaattttaaaaaattatatctct-ctacctactgctttcgaccaataaacactta 323
Query: 125 ctaactctattttcagttttttttt--caaatttgcctctatcatcctttattgttgccc 182
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ctaactctattttcagtttttttttttcaaatttgcctctatcatcctttattgttgccc 383
Query: 183 ttgcttacttgcggttgaggggacctctgactgatcacagctgtctacatggcccttcag 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgcttacttgcagttgaggggacctctgactgatcacagctgtctacatggcccttcag 443
Query: 243 atcctctgaaaaacttctgagaagaatagctccagttttgttgtccaactcaaaatgttt 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcctctgaaaaacgtctgagaagaatagctccagttttgttgtccaactcaaaatgttt 503
Query: 303 cggtgtttccaggactcaatattctctctctctctctctctctctttctctctctctctc 362
| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 504 cagtgtttccaggactcaatatgctctctctctctctctctctct--ctctctctctctc 561
Query: 363 tctctctctgtctctgtctctgtctctctctctctctctctctctctctctctctctctc 422
||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 562 tctctctct--------------ctctctctctctctctctctct-t---tctctctctc 603
Query: 423 ccagccctgttatccagattcacttttgtcttttcttatttttactttttaaatctattt 482
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccagccctgttatctggattcacttttgtcttttcttatttttactttttaaatctattt 663
Query: 483 tttatgtgactgtagctttgcctgcatggatatgtgtgctataggcatgcagtgcccctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttatgtgactgtagctttgcctgcatggatatgtgtgctataggcatgcagtgcccctg 723
Query: 543 gaggccagaagggggaatcaaatccccctgcgactgggattacagaggagtgtgagccac 602
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 724 gaggccagaagggggaatcaaatccccctgcgactgggattgcagaggagtgtgagccac 783
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 386 ctctctctctctctctctctctctctctctctct 419
||||||||||||||||||||||||||||||||||
Sbjct: 931 ctctctctctctctctctctctctctctctctct 964
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 385 tctctctctctctctctctctctctctctctct 417
|||||||||||||||||||||||||||||||||
Sbjct: 932 tctctctctctctctctctctctctctctctct 964
Score = 58.7 bits (30), Expect = 1e-12
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 380 ctctgtctctctctctctctctctctctctctct 413
|||| |||||||||||||||||||||||||||||
Sbjct: 931 ctctctctctctctctctctctctctctctctct 964
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 121
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_p03.g1 MSMg01no299_p03.g1 CHROMAT_FILE:
MSMg01no299_p03.g1 PHD_FILE: MSMg01no299_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:00 2005
(289 letters)
>mm_chr16_43964275_43964963
Length = 689
Score = 551 bits (285), Expect = e-161
Identities = 288/289 (99%)
Strand = Plus / Minus
Query: 1 tgccttatctctaggcttggcattaaattaatatttgtgtgtggttttgattttttttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgccttatctctaggcttggcattaaattaatatttgtgtgtggttttgattttttttag 430
Query: 61 tgttaatgccaatatttaataagtgtgctgtaattaagtataagcagtggtttacatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgttaatgccaatatttaataagtgtgctgtaattaagtataagcagtggtttacatgga 370
Query: 121 gtgagattaaatatgaatttagtttcatttttcttgtagccattagtctttgaaacactt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgagattaaatatgaatttagttccatttttcttgtagccattagtctttgaaacactt 310
Query: 181 gtttttagatggcagtcatggtattcataaaaaggtgtgtggcctgcatgcagttcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtttttagatggcagtcatggtattcataaaaaggtgtgtggcctgcatgcagttcagct 250
Query: 241 ctgccctggcgttttcttgtccgtgaggaaatgaccagagccgctctgc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgccctggcgttttcttgtccgtgaggaaatgaccagagccgctctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
