BAC Information

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BAC

Clone NameMSMg01-301C18
Chromosome16 (Build37)
Map Location 64,868,478 - 64,868,767
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1
Downstream geneLOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301C18.T7 (MSMg01no301_c18.b1)MSMg01-301C18.TJ (MSMg01no301_c18.g1)
ACCAG427447AG427448
length760757
length of high quality
(start - end)
665 (43 - 707)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no301_c18.b1 PHD_FILE: MSMg01no301_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:30 2005CHROMAT_FILE: MSMg01no301_c18.g1 PHD_FILE: MSMg01no301_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTCACCTGATTGATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGGA
GAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACA
AAACACCCAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAGAACAACAGAAACAGAGACTGGAGG
AGGCAGTTGTCAGTCAAGAAGTATCAATGATTTCTGGCAAACCACAAAAC
TAGCAAGGAGCAGGAAGGATTCCCCCCCCCCCCCACTGGTTTCAAGAGTG
CAGCCTTTAGAAGTCCCCAGACTGTACTTCCCGAAACCCAGCGTGCAGGT
ATGCCAGGCAAGTGCCTTATCAGCAGGATACATCAATCAACCGTGTGCCA
ACACCTTGACTCTAAGTTTGTAGTTTCCAGAATTGTGGGAGAACATATTT
GTGTTGTTTTTAGCTACCCAGTTTGCGTCTGCCTGCCTATGAGAATTGCT
GGAAGTGGATATAGCTGCAATTCCTGGTTTTAATGGCAACTCTGTGAATA
TGTTTCTACCAATCTCACCTACAAGAAGACCATAGACTTAAATGAAGTGA
CACTTGAGTTATAAGGACTTGAGGGACAAAGGTCTAAGTTAGGCCTCCCA
GTCTTCCCCTTCTTGCAGAAGAAAGATGGTCGCACTTGAATGAATGGGCT
TTTTAAGATGGTCTCACTTGATGGATGGGCTTTTGTCATGGTCCATTCAC
ATTTGGGAGAACAATCTTTACTCAGTCTACAGTTCAAGTATGAGTTTCCT
TCAAAAGCACCCTCGTAGTCACCACAAGAATAATAACAGATTTCAGTGTG
CCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_c18.g1 MSMg01no301_c18.g1 CHROMAT_FILE:
MSMg01no301_c18.g1 PHD_FILE: MSMg01no301_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:30 2005
         (294 letters)



>mm_chr16_64868359_64869048
          Length = 690

 Score =  534 bits (276), Expect = e-156
 Identities = 288/294 (97%), Gaps = 4/294 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagaacaacagaaacagagactggaggaggcagttgtcagtcaagaagtatcaatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 catagaacaacagaaacagagactggaggaggcagttgtcagtcaagaagtatcaatgat 350

                                                                       
Query: 61  ttctggcaaaccacaaaactagcaaggagcaggaaggattcccccccccccccactggtt 120
           |||||||||||||||||||||||||||||| |||||||||||||| ||||    ||||||
Sbjct: 349 ttctggcaaaccacaaaactagcaaggagcgggaaggattcccccgcccc----ctggtt 294

                                                                       
Query: 121 tcaagagtgcagcctttagaagtccccagactgtacttcccgaaacccagcgtgcaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcaagagtgcagcctttagaagtccccagactgtacttcccgaaacccagcgtgcaggta 234

                                                                       
Query: 181 tgccaggcaagtgccttatcagcaggatacatcaatcaaccgtgtgccaacaccttgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgccaggcaagtgccttatcagcaggatacatcaatcaaccgtgtgccaacaccttgact 174

                                                                 
Query: 241 ctaagtttgtagtttccagaattgtgggagaacatatttgtgttgtttttagct 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctaagtttgtagtttccagaattgtgggagaacatatttgtgttgtttttagct 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 690
Length adjustment: 9
Effective length of query: 285
Effective length of database: 681
Effective search space:   194085
Effective search space used:   194085
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)