Query= MSMg01no302_l04.b1 MSMg01no302_l04.b1 CHROMAT_FILE:
MSMg01no302_l04.b1 PHD_FILE: MSMg01no302_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:24 2005
(703 letters)
>mm_chr16_43366623_43367725
Length = 1103
Score = 1305 bits (675), Expect = 0.0
Identities = 693/699 (99%)
Strand = Plus / Plus
Query: 5 gaattccacaaaatatttttaaactgatgataagcaaagttaaggggatattttatcaca 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaaatatttttaaactgataataagcaaagttaaggggatattttatcaca 264
Query: 65 ttgagaatgcagtttatacagatatttatgaacactatctacaaacgagatgatataact 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 ttgagaatgcagtttatacagatatttatgaacactatctacaaatgagatgatataact 324
Query: 125 gataagtctaatgattatccttggttaaacatacatatcagattattaacataaattcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gataagtctaatgattatccttggttaaacatacatatcagattattaacataaattcta 384
Query: 185 ttatgcccagcttcaaaatattaattgttctgtgtaagaaatagcttaaattaactagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatgcccagcttcaaaatattaattgttctgtgtaagaaatagcttaaattaactagac 444
Query: 245 agaaattaaatagctaataattaaaattgagaaatatatttaatgaattcatttggtaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaattaaatagctaataattaaaattgagaaatatatttaatgaattcatttggtaag 504
Query: 305 aattaatacatatataaatgacccagtttattttttctcattcctcgactactcagctgt 364
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 505 aattaatacatatataaatgacccagtttattttttctcattcctcggctactcagttgt 564
Query: 365 atattaaataccttaatactgcagttacatattagtgttagaatatcatttcccagatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atattaaataccttaatactgcagttacatattagtgttagaatatcatttcccagatat 624
Query: 425 cctttcaagatacccagtcagtcaagtcccacttctctaatgatgctctgagactgacaa 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 cctttcaagatacccagtcagtcaagtcccacttctctaatgatggtctgagactgacaa 684
Query: 485 cagttttgcaggcagcagccatccatcacttaccatatgccgccttgaattgaaaacctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagttttgcaggcagcagccatccatcacttaccatatgccgccttgaattgaaaacctt 744
Query: 545 tgaattgatagaaggtattatattttgtacttgtgtattccttccccttccaaacaatgt 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 tgaattgatagaaggtattatattttgcacttgtgtattccttccccttccaaacaatgt 804
Query: 605 catattgcctcaatcttagtgggggagctggaggatcaatggatagggaatgaatgatta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 catattgcctcaatcttagtgggggagctggaggatcaatggatagggaatgaatgatta 864
Query: 665 tctatattcattggcagtgagtatctcttggttaccaca 703
|||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tctatattcattggcagtgagtatctcttggttaccaca 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no302_l04.g1 MSMg01no302_l04.g1 CHROMAT_FILE:
MSMg01no302_l04.g1 PHD_FILE: MSMg01no302_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:24 2005
(679 letters)
>mm_chr16_43542809_43543888
Length = 1080
Score = 1253 bits (648), Expect = 0.0
Identities = 672/680 (98%), Gaps = 1/680 (0%)
Strand = Plus / Minus
Query: 1 atggtactggccagttccaaatgccctcaactgtgcagtgaagggctcctttcaaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 atggtactggccagttccaaatgccctcaactgtgcagtgaagggctcctttcaaatagt 821
Query: 61 cagttccagttttgtgaaagttgtctggatggttttcttgattacaagatggatttaatg 120
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 820 cagttccagttttgtgaaagttgtctggatggtttacttggttacaagatggatttaatg 761
Query: 121 tggttaccaccacaaatttagttcctaagcaaatcatatggctcagtataatattttcta 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tggttaccaccacagatttagttcctaagcaaatcatatggctcagtataatattttcta 701
Query: 181 ctgagtaccttctcaataaatatttattcagtgagtaaatgtcttgggatacag-aaaaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 700 ctgagtaccttctcaataaatatttattcagtgagtaaatgtcttgggatacagaaaaaa 641
Query: 240 aaattcatttcatagtcacaggttttaatttaaattaaaatgaatagctgccaaaaaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaattcatttcatagtcacaggttttaatttaaattaaaatgaatagctgccaaaaaaga 581
Query: 300 acactgggtatcagtattaaggtgtctgagcccatgagcaaaataattcaagacatgact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acactgggtatcagtattaaggtgtctgagcccatgagcaaaataattcaagacatgact 521
Query: 360 ctcactcatgttgaggttgtggtattgctaaaagcagctatgccacaagacaagacaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctcactcatgttgaggttgtggtattgctaaaagcagctatgccacaagacaagacaatg 461
Query: 420 accatttggtatttttcacatcaggagagagtgctcctcctagcatcctcttccaaaaag 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 460 accatttggtatttttcacatcaggagagagtgctcctcctagcatcctctttcaaaaag 401
Query: 480 acataattaatcaccagcaaactccctgagtttattaagattatattaccagtccatcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acataattaatcaccagcaaactccctgagtttattaagattatattaccagtccatcaa 341
Query: 540 atgctcacagcatctagctggggtatgaaaatgacagattcattttcttcattcttcaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atgctcacagcatctagctggggtatgaaaatgacagattcattttcttcattcttcaca 281
Query: 600 tggaaaaacagaaatttacctctatcgcagtcaccccaactcttttgagaggtgggaaac 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgggaaaacagaaatttacctctatcgcagtcaccccaactcttttgagaggtgggaaac 221
Query: 660 agttgagtcaacaagtacta 679
| || |||||||||||||||
Sbjct: 220 aattaagtcaacaagtacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
