Query= MSMg01no302_l24.b1 MSMg01no302_l24.b1 CHROMAT_FILE:
MSMg01no302_l24.b1 PHD_FILE: MSMg01no302_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:27 2005
(604 letters)
>mm_chr16_31038254_31039257
Length = 1004
Score = 1118 bits (578), Expect = 0.0
Identities = 595/603 (98%), Gaps = 4/603 (0%)
Strand = Plus / Plus
Query: 2 ggaattctcaccctcttctctagcaccatgtctgcctatgagctgcctgcttcccacccc 61
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattctcaccctcttctttagcaccatgtctgcctatgagctgcctgcttcccacccc 265
Query: 62 agttaaatgctttcccaatacaagccccaatcaaacactttataagaattgtcatggtca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agttaaatgctttcccaatacaagccccaatcaaacactttataagaattgtcatggtca 325
Query: 122 cgatgtctcataacaatagaacactgactaagacagggagacagaccacattctaaccat 181
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 cgatgtctcatcacaatagaacact----aagacagggagacagaccacattctaaccat 381
Query: 182 agcagttctttagtattccatacaagttaggtgataagtttttaattctttactagaaag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agcagttctttagtattccatacaagttaggtgataagtttttaattctttactagaaag 441
Query: 242 aaatgttaattgtatgaaatgacaggtatgcaatgactgaagtgatcgctacctgataaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatgttaattgtatgaaatgacaggtatgcaatgactgaagtgatcgctacctgataaa 501
Query: 302 accatggaccaaatcaacacatctgtcccatgagtaaataagttactgtgtgtgtgtgtt 361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 accatggaccaaatcaacacatctgtcccatgagtaaataagttaccgtgtgtgtgtgtt 561
Query: 362 agcaaaccaagaaaacaaactcatatctcccccactggccctccaacgcagtgctgggag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agcaaaccaagaaaacaaactcatatctcccccactggccctccaacgcagtgctgggag 621
Query: 422 ggtccccatgctggatgcacccactatgatcaatacagaatggagagaagagctaatcac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggtccccatgctggatgcacccactatgatcaatacagaatggagagaagagctaatcac 681
Query: 482 acactaatcacaggcttctctctatgcttctccttatccataanatctgactcacagaag 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 682 acactaatcacaggcttctctctatgcttctccttatccataaaatctgactcacagaag 741
Query: 542 gatgactaactcacgacaggagataacccaataactactcaactggggtttgaggagata 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gatgactaactcacgacaggagataacccaataactactcaactggggtttgaggagata 801
Query: 602 gta 604
|||
Sbjct: 802 gta 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_l24.g1 MSMg01no302_l24.g1 CHROMAT_FILE:
MSMg01no302_l24.g1 PHD_FILE: MSMg01no302_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
(194 letters)
>mm_chr16_31214072_31214665
Length = 594
Score = 321 bits (166), Expect = 2e-92
Identities = 187/194 (96%), Gaps = 2/194 (1%)
Strand = Plus / Minus
Query: 2 cacatgggcacacagacaagcatcagcttctgcccttgaatttacattcaaggcagacag 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cacatgggtacacagacaagcatcagcttctgcccttgaatttacattcaaggcagacag 335
Query: 62 tgtggccagcatcatggtggaggctcacacagggacattaaaagggtgtgtcagaggccc 121
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 334 tgtggccagcatcatggtcgaggctcacacagggacattagaagggtgtgtcagaggccc 275
Query: 122 aaacccagaactatagtctctgggagaaggcacagaa-tgggattgcaaatgagtagcgg 180
||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||
Sbjct: 274 aaacccagaactatagtctctgggagaaggcacagaagtgg-attgcagatgagtagtgg 216
Query: 181 gtatcctgctgcag 194
||||||||||||||
Sbjct: 215 gtatcctgctgcag 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
