BAC Information

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BAC

Clone NameMSMg01-303O19
Chromosome16 (Build37)
Map Location 38,687,955 - 38,890,251
singlet/doubletdoublet
Overlap geneCdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
Upstream geneLOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a
Downstream geneIgsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303O19.T7 (MSMg01no303_o19.b1)MSMg01-303O19.TJ (MSMg01no303_o19.g1)
ACCAG429371AG429372
length762764
length of high quality
(start - end)		703 (38 - 740)596 (68 - 663)
definitionCHROMAT_FILE: MSMg01no303_o19.b1 PHD_FILE: MSMg01no303_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:57 2005CHROMAT_FILE: MSMg01no303_o19.g1 PHD_FILE: MSMg01no303_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,889,777 - 38,890,251)(38,687,955 - 38,688,550)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTAAATGACTAGTATCTGGCCCAGAACTCAACACACTGGAGAAAGAAATA
GAAGATTTTAACTGACTGCATTGTAGTCTGATGGTGTCTATAGTTATGGG
GCCCAGAGCCAGAACATAATGCACAGTTCATATTTAAATTCAGTTTATAC
TTATGGCATTATTTACTATGTTCTTTGCAATGAAATTATGTGACTTGCTT
TTAACCTATATAGCCTTATTCAAATCCTCAGTGCAATGCTATGTGATAGG
TTGTGTCACCATTGTGACATTTGATAGTCACTGTCAACTTGACTATATCT
GTAATCTTCTAGGAAACACACATCTGGTCGTGTCTGTAGGGTTGTTGCCA
TCTTGACGCACCAGGAAATACTTGCCTATATATAAGTGGCACCCATCCAT
GAGCTGGGGTCCCAGCCTGGATAAAAAGGGGGAGAAGCCAGGAGAGCACC
AGCATTTGCCTCTCTCTTGCTCTCTGACTGTGGAGAGTGTGACCAGCTGT
TTCACGTTCATGTGGCCCTGTTTTCGCTGCCATGATGGACCACATACCCT
TAAGTCCTGTCCCATAACATTCTTGTATGGAATACTTGGTTATAGTAATG
AGAAAAGTGACTGATGCAACCTGTTGCTCTGGATAAAGGAAACAGATTCA
GGACTGGGGAGGTGACTGCATGGGGAGGTGACTGGCTGATCTTCCAGAGG
ATTCGGGTTCAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACGCTTTCTTGGAAACGTGATTACTTCTCTTC
AGAGCTGAGTCTACTCTAACCAGAACAAGGGGTGTGAAAATAGAAGGGCT
TGGCTTCCTAGCGAAATGGCTGGTGGGGTATTGGGTTGCTGTGAGCTGTA
TTACGTTTATCCAGTCTTAAAATAACATTGCTGCATGGAGAAAATGACTC
CCCCAAACATCCCCTCCGCACTGCAACTGAAGAAACTGTGCGAGTTTCAT
ATTCCTTTAGCAACTCAAGATTTTTGGAGATGTGGTATTTATTTTTTGTG
CCTTTGTCTTGCCAGATCCTGTGGCCGACCACGGCAAGCTATCGTTATCT
CCTTTTATACACCACGACGCTGAGGTACAGGGAGGGGACCCTTCCAAATC
ATGGGACTAGTCTACAGGTGTTCTGGTTCCTACAAGGGCTTTAAATGCAC
ACACGACATAGATAGACTTTACAGCCTCCTGGGAGAGGGAATCTAGGGCA
CGGCTTTGGTATTGACAGCTCTGTGTCCTTGGGGAACAGATGTCCTCTTT
GTATACCGAGTCTAATAACTACCTACCTCACCTACTTTGTTGAAGTTTGA
AGAACAAATGAAATTCCGAGTAAGTACTTTAGCATATGCAAAAGGTCTCT
TCTTCTGTTTTTCCTACTCTCACATGACAGTCTGGTCTCCAGCCGTCTAC
TAACTTGTACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_o19.b1 MSMg01no303_o19.b1 CHROMAT_FILE:
MSMg01no303_o19.b1 PHD_FILE: MSMg01no303_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:57 2005
         (703 letters)



>mm_chr16_38889777_38890879
          Length = 1103

 Score =  864 bits (447), Expect = 0.0
 Identities = 468/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtaaatgactagtatctggcccagaactcaacacactggagaaagaaata 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattctttgtaaaggaatagtatctggcccagaactcaacacactggagaaagaaata 416

                                                                       
Query: 64  gaagattttaactgactgcattgtagtctgatggtgtctatagttatggggcccagagcc 123
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaagattttaacagactgtattgtagtctgatggtgtctatagttatggggcccagagcc 356

                                                                       
Query: 124 agaacataatgcacagttcatatttaaattcagtttatacttatggcattatttactatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agaacataatgcacagttcatatttaaattcagtttatacttatggcattatttactatg 296

                                                                       
Query: 184 ttctttgcaatgaaattatgtgacttgcttttaacctatatagccttattcaaatcctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttctttgcaatgaaattatgtgacttgcttttaacctatatagccttattcaaatcctca 236

                                                                       
Query: 244 gtgcaatgctatgtgataggttgtgtcaccattgtgacatttgatagtcactgtcaactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gtgcaatgctatgtgataggttgtgtcaccattgtgacatttgatagtcactgtcaactt 176

                                                                       
Query: 304 gactatatctgtaatcttctaggaaacacacatctggtcgtgtctgtagggttgttgcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gactatatctgtaatcttctaggaaacacacatctggtcgtgtctgtagggttgttgcca 116

                                                                       
Query: 364 tcttgacgcaccaggaaatacttgcctatatataagtggcacccatccatgagctggggt 423
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tcttgacggaagaggaaatacttgcctatatataagtggcacccatccatgagctggggt 56

                                                                  
Query: 424 cccagcctggataaaaagggggagaagccaggagagcaccagcatttgcctctct 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  cccagcctggataaaaagggggagaagccaggagagcaccagcatttgcctctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_o19.g1 MSMg01no303_o19.g1 CHROMAT_FILE:
MSMg01no303_o19.g1 PHD_FILE: MSMg01no303_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:57 2005
         (596 letters)



>mm_chr16_38687755_38688750
          Length = 996

 Score = 1106 bits (572), Expect = 0.0
 Identities = 590/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgctttcttggaaacgtgattacttctcttcagagctgagtctactctaaccagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgctttcttggaaacgtgattacttctcttcagagctgagtctactctaaccagaaca 260

                                                                       
Query: 61  aggggtgtgaaaatagaagggcttggcttcctagcgaaatggctggtggggtattgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aggggtgtgaaaatagaagggcttggcttcctagcgaaatggctggtggggtattggatt 320

                                                                       
Query: 121 gctgtgagctgtattacgtttatccagtcttaaaataacattgctgcatggagaaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgagctgtattacgtttatccagtcttaaaataacattgctgcatggagaaaatga 380

                                                                       
Query: 181 ctcccccaaacatcccctccgcactgcaactgaagaaactgtgcgagtttcatattcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccccaaacatcccctccgcactgcaactgaagaaactgtgcgagtttcatattcctt 440

                                                                       
Query: 241 tagcaactcaagatttttggagatgtggtatttattttttgtgcctttgtcttgccagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcaactcaagatttttggagatgtggtatttattttttgtgcctttgtcttgccagat 500

                                                                       
Query: 301 cctgtggccgaccacggcaagctatcgttatctccttttatacaccacgacgctgaggta 360
           |||||||||||||||||||||||||||||||||||||||||| |  | ||||||||||||
Sbjct: 501 cctgtggccgaccacggcaagctatcgttatctccttttatagaggaggacgctgaggta 560

                                                                       
Query: 361 cagggaggggacccttccaaatcatgggactagtctacaggtgttctggttcctacaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagggaggggacccttccaaatcatgggactagtctacaggtgttctggttcctacaagg 620

                                                                       
Query: 421 gctttaaatgcacacacgacatagatagactttacagcctcctgggagagggaatctagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttaaatgcacacacgacatagatagactttacagcctcctgggagagggaatctagg 680

                                                                       
Query: 481 gcacggctttggtattgacagctctgtgtccttggggaacagatgtcctctttgtatacc 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacggctttggtattgacagctctgtgtccttggggaacagatgtcctctttgtatacc 740

                                                                   
Query: 541 gagtctaataactacctacctcacctactttgttgaagtttgaagaacaaatgaaa 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtctaataactacctacctcacctactttgttgaagtttgaagaacaaatgaaa 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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