Query= MSMg01no304_b10.b1 MSMg01no304_b10.b1 CHROMAT_FILE:
MSMg01no304_b10.b1 PHD_FILE: MSMg01no304_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:15 2005
(748 letters)
>mm_chr16_69055956_69057103
Length = 1148
Score = 1400 bits (724), Expect = 0.0
Identities = 742/748 (99%)
Strand = Plus / Plus
Query: 1 caaacacctctaatttaaatcaacttaatcaacacatttcattgaaagattctgcagtac 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caaacacctctaatttaaatcaacttaatcaacgcatttcattgaaagattctgcagtac 260
Query: 61 aattatagccctaatgtgtaatggagttcatttcaggcctacaaccaaagagtaattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattatagccctaatgtgtaatggagttcatttcaggcctacaaccaaagagtaattgca 320
Query: 121 ttacatatattttcttatggaaaccatttactgccttcaggtatttttaaagtatgattt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacatgtattttcttatggaaaccatttactgccttcaggtatttttaaagtatgattt 380
Query: 181 cttttatatgatgcaattttgagtcacatagagcaccttttgcatataatattcaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttatatgatgcaattttgagtcacatagagcaccttttgcatataatattcaaatat 440
Query: 241 catttttcttcatctgatcaaaacctagattaagaatatgaataatagattcatcagtaa 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 catttttcttcatctgatcaaaacctagattaagaatatgaagaatagattcatcagtaa 500
Query: 301 aacctacattcattattaaaatggctaatgattctttataataacaaatgtaatctttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctacattcattattaaaatggctaatgattctttataataacaaatgtaatctttca 560
Query: 361 tttcattttctcattttaagggtttattctacaatgggaaatttttattttatatctgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcattttctcattttaagggtttattctacaatgggaaatttttattttatatctgac 620
Query: 421 atgtcgaactattatatcttgatgattgttttgttgcttcatgctcttgaatattattta 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 atgtcgaactattatatcttgatgattgttttgttgcttcatgctcttgagtattattta 680
Query: 481 actatacagaaaatatatttttcatacttgactgaagcattcatactttctgaaatagtg 540
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 actatacagaaaatacatttttcatacttgactgaagcattcatactttcggaaatagtg 740
Query: 541 tacatggtgaatttttctgaaaataaaaagtgcaataacaaacatcatagcaaaacttgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacatggtgaatttttctgaaaataaaaagtgcaataacaaacatcatagcaaaacttgc 800
Query: 601 atttatgaatgaaagtcatatatcaaaatcaattgatgacctcaaaccactaattacttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttatgaatgaaagtcatatatcaaaatcaattgatgacctcaaaccactaattacttc 860
Query: 661 ttgaatatttatatatttaataactaaggatgatcttcctttaatgcaatatatttaagc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttgaatatttatatatttaataactaaggatgatcttcctttaatgcaatatatttaagc 920
Query: 721 taattatattaaatataatattatttta 748
||||||||||||||||||||||||||||
Sbjct: 921 taattatattaaatataatattatttta 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space: 839844
Effective search space used: 839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_b10.g1 MSMg01no304_b10.g1 CHROMAT_FILE:
MSMg01no304_b10.g1 PHD_FILE: MSMg01no304_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:15 2005
(777 letters)
>mm_chr16_69225428_69226604
Length = 1177
Score = 1303 bits (674), Expect = 0.0
Identities = 697/708 (98%), Gaps = 7/708 (0%)
Strand = Plus / Minus
Query: 5 atagacgtttccctactaaccgtctcccttctacccactgctttatctcagtcctgaact 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 702 atagacgtttccctactaaccgtctcccttctacccagtgctttatctcagtcctgaact 643
Query: 65 ccaacagaccactcgtgttatggaagcagttaggctgtcagaggatcttctattctcttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccaacagaccactcgtgttatggaagcagttaggctgtcagaggatcttctattctcttt 583
Query: 125 atgttcctctagatacacctgcccagtaacatcctaaaatggtagcagatcctctgaata 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 582 atgttcctctagatacacctgcccagtaacatcctaaaatggtagcagatcctctggata 523
Query: 185 acccttcttcattggttccctgtaacctagaagggaaactaagaattgggccagaaaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acccttcttcattggttccctgtaacctagaagggaaactaagaattgggccagaaaaga 463
Query: 245 aaatgcccttgcctggtaaacttgcctcttctctctccctctctgctttagtcacctatc 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaatgctcttgcctggtaaacttgcctcttctctctccctctctgctttagtcacctatc 403
Query: 305 tttcctgtttttgtttttgtttttgtttttgtttttgtttttgtttttgtttttgttttt 364
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttcc------tgtttttgtttttgtttttgtttttgtttttgtttttgtttttgttttt 349
Query: 365 ttccacgaatgttgggcatatcctatctgtgactcattcagttaaatctttctttgaata 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttccacgaatgttgggcatatactatctgtgactcattcagttaaatctttctttgaata 289
Query: 425 ttctcttagtcagcctgtcattgagtcttgaaagcatgactactctcttttaaaaactaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttctcttagtcagcctgtcattgagtcttgaaagcatgactactctcttttaaaaactaa 229
Query: 485 tcataccttcagttttacagattaaagctttgtactaagggtatgtttgtattctaacaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcataccttcagttttacagattaaagctttgtactaagggtatgtttgtattctaacaa 169
Query: 545 gatcatactgctctccagggcatgcctgcattccagctgaatcatatagacctagaatgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gatcatactgctctccagggcatgcctgcattccagctgaatcatatagacctagaatgt 109
Query: 605 gatcccttgccagagaaaagacatgttgttggattaaaatatatctacaccagtaaggtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gatcccttgccagagaaaagacatgttgttggattaaaatatatctacaccagtaaggtt 49
Query: 665 agaagatgtctatttgagggaagaagtacaatgggggg-aaaaacata 711
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 48 agaagatgtctatttgagggaagaagtacaatggggggaaaaaacata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1177
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1167
Effective search space: 895089
Effective search space used: 895089
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
