BAC Information

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BAC

Clone NameMSMg01-304E10
Chromosome16 (Build37)
Map Location 12,397,827 - 12,398,503
singlet/doubletsinglet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304E10.T7 (MSMg01no304_e10.b1)MSMg01-304E10.TJ (MSMg01no304_e10.g1)
ACCAG429612AG429613
length1,3301,379
length of high quality
(start - end)		784 (87 - 870)691 (92 - 782)
definitionCHROMAT_FILE: MSMg01no304_e10.b1 PHD_FILE: MSMg01no304_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:41 2005CHROMAT_FILE: MSMg01no304_e10.g1 PHD_FILE: MSMg01no304_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGTTTTNNNNNNCACATTGGCGCATAGACTCCTATGGGAGAGGATC
CGCGGAATTCTTTCATTGACTCTTTTCTTTAAGTCATGTTTGGTTGTACC
TTATGTCTCTCAGACATCCAGGTTCTAGCTCCTGGCCATCCAGGTAGTAT
TAGGAATGGGTTCCCTCTCCTGGTGTGGGCCTCAAGTTAGACCAGTCATT
GGTAGGGCACTTTCTCATATTCCAATCTGCACATCTTACATGCAAGACAG
ATTGTACATTGAAGGTTTTTCTGGGTTGGTGTGGCAGCCCTACTACTGGA
AGCCTTGCCTGGGGTCTTAGCATTTCATTGCCATGAATAGACACCGTGAC
CACAGCAACTCTTCTAATGAAAAACATTTAATTAAGGTTAGCTTACAGTG
GAGAAGTGTATTCGATTATCATCATGCCATGAAGCATTTTAGCTGGTAGG
CACACATGGTCCTAGAGAAGTAGCCTAGATTTCTATATTTTGATACTTAG
GCAGCAGGAAGACAGAGTGAGCTACTGGGCCCCACTTGAGGTTCTGAAAC
TTCAAAACCTGTGACACACTTCCTCCAACAAGGCCACACCTCCAATAATG
CCACTCTATATGAGTATATTGGGGATATTTTCATTGAAACCATCACATAT
GCTTACAGAAGATGCTCAGTTCAAGCTCCATATCATCCTTTCCAATAATG
CACTCTAGCATCAACATCATAGCTTCCAGGAAGTTTCCACTGCACTAGGT
TTTCACATTGTCCCTCAAATGCTCCCTAATTCCTGTCATGTCTCCTCATG
GTCTCTTGTTTTTCCCATGTCCCTCTATCCTGTACCTGATCACACCTGTT
CCCATCCCCACCTGTCTTCAGTACACCCACAAAATCTATTCAATTTCCCC
TTCCCAGGGAGGTCCATGGGGCCCCCTTAATTTCTCCATGGTACTTAAAT
TCTCCGAAGCCGGGAATGGTATGGGATAATTTTTACTTATAACTCTATTT
TCTTAAAAAAAAAATTTGTTTGGTTTTCTAGACCTGGAATACCTCCTTAA
CAAGAATTTTTTTTATTCAAACCTGTCCCCGCGGATTACTTATTTTTATA
AATTTATAAAATAGGAAACCTCTTGTGTTATGGCAAAATTTTTTTTCTTT
TCTTCTAATTACAAAAAGAATTTGCGCGCGTTTCGTAAATATATATAAAC
ATACTACAATCCGTACTAATATCTTTTTTATTCAATAATTTATTTTGACT
TTACTTTATTTATATTTCATCTTCATTTCATTANCTTTTACTACCCTACT
TTTTCGTCATTAATACTATATTATCTATTT

NNNCCAACTTTTNNNNNNACAGATGTGAGGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAGCTAATGAAAAA
TCTTGTCACAAACACAGGATGGGCCTTACCCGATTAATGAAGGCTGAGTT
TGACTGTGACCTCACACACATGATGCGCATGGACATGCTTCTACACACAC
AGAAACACACACACACAGGAGCACACACACACATACACACACACACACAC
ACACACACACACATAAGCGCGCACACACACACATACACACATATGCAAAC
ACACAAATGCATGCATACCCTAAAAATAAACCAAACAAACACACACGCAA
AGAAAAAAGACCCACTCAACTCCCTGGGTAGATAAGAGATAGTCATTTTT
AAGTGTAAAAGAATAATTTTAATCACTCTTTTAACATGCAAGACAAGGTT
TTGGTTCATTTCCTTTCCATTAAAGGCACATACAGCCTATTGACTTCCAT
ATTGATTTCTATAAAGAGAATGAGCTAGAAAAAAAACCAAGTGGTGTTCA
ATGAAGACTTAGAGCTGTATAGCAGAAGAACTGTGATTCCAAAGGCTTTG
AGGAGTTTCATCTAATTAGTCATTGTAATCAGGCCTCTGTAGGGATAAGT
GCTAATTGTTGAAACAGACAAGTGGTTAATCACATCTGCTCGGTCGTCTT
GCTGGCTAGCAGCAGCCTCTATGCTGCTAGAAGTCCATAATGAAGACACA
AGCGGACTGCTTTGACCTGCTTTCACTACAGTGGAAAGTGCACCCCTATG
GCAGTGAGGGCATTCACAGAGCTGAGCCCTGAGCTTCTGAATTCTTTTTT
TTATTTAAANATTTTTTTATTATGNATTTTCCTCACTTACATTTCCCATG
CTATCCCAAAAAACCCCCCTACCTTCCCCCCCCTCCCCTATCAACCCATT
CCCATTTTTTGGTCCTGGGGTCCCCTGTACGGGGGGAAAAAAAATTTCAT
GGTCATGGGGCCCCCCTTTCCTTGATGGCCAATAAGGCATCTTTTTTTTT
TTTTGCGTTAAAACAAAAATCCCCGGGACGGAATTTTAAGTTTACCCTGA
GCCGGCCAGCAAAGCAAAAAATGGGGAAAAACCCAAAAAAAAAGTGAAGG
TTAAAACGGCCTTGTTTTTTTTTTGGGGAAAATCCTCCTAATCACATTTG
GAGGTCGGGCCGCGTTCTTGTACAAAGAACAATTGCTCTAAAAATTATTT
TTGGTTTTAAAAAAAACACCGCCCTCTGAAAACCTTATAAAAATCTTTTT
CCTATCTCCCTAGCGCATTANCCCCNNNNCNTTNCTANNNNNNNNNNCCA
GCGCCCCTTTTGCTCCGCCTGTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_e10.g1 MSMg01no304_e10.g1 CHROMAT_FILE:
MSMg01no304_e10.g1 PHD_FILE: MSMg01no304_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:42 2005
         (691 letters)



>mm_chr16_12397413_12398503
          Length = 1091

 Score = 1139 bits (589), Expect = 0.0
 Identities = 658/687 (95%), Gaps = 12/687 (1%)
 Strand = Plus / Minus

                                                                        
Query: 7    aaatcttgtcacaaacacaggatgggccttacccgattaatgaaggctgagtttgactgt 66
            |||||||||||||||||||||||||||  | || ||||||||||||||||||||||||||
Sbjct: 1091 aaatcttgtcacaaacacaggatgggcagtgcctgattaatgaaggctgagtttgactgt 1032

                                                                        
Query: 67   gacctcacacacatgatgcgcatggacatgcttctacacacacagaaacacacacacaca 126
            ||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||
Sbjct: 1031 gacctcacacacatgctgcacatggacatgcttctacacacacagaa--acacacacaca 974

                                                                        
Query: 127  ggag--cacacacacacatacacacacacacacacacacacacacacataagcgcgcaca 184
            ||||  |||||||||||||||| |||||||||||||||||||||||||        ||||
Sbjct: 973  ggagcacacacacacacatacatacacacacacacacacacacacaca--------caca 922

                                                                        
Query: 185  cacacacatacacacatatgcaaacacacaaatgcatgcataccctaaaaataaaccaaa 244
            |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  cacacacacacacacacatgcaaacacacaaatgcatgcataccctaaaaataaaccaaa 862

                                                                        
Query: 245  caaacacacacgcaaagaaaaaagacccactcaactccctgggtagataagagatagtca 304
            |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  caaaaacacatgcaaagcaaaaagacccactcaactccctgggtagataagagatagtca 802

                                                                        
Query: 305  tttttaagtgtaaaagaataattttaatcactcttttaacatgcaagacaaggttttggt 364
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  tttttaaatgtaaaagaataattttaatcactcttttaacatgcaagacaaggttttggt 742

                                                                        
Query: 365  tcatttcctttccattaaaggcacatacagcctattgacttccatattgatttctataaa 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  tcatttcctttccattaaaggcacatacagcctattgacttccatattgatttctataaa 682

                                                                        
Query: 425  gagaatgagctagaaaaaaaaccaagtggtgttcaatgaagacttagagctgtatagcag 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681  gagaatgagctagaaaaaaaaccaagtggtgttcaatgaagacttagagctgtatagcaa 622

                                                                        
Query: 485  aagaactgtgattccaaaggctttgaggagtttcatctaattagtcattgtaatcaggcc 544
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621  aagaactgtgattccaaaggctttgagaagtttcatctaattagtcattgtaatcaggcc 562

                                                                        
Query: 545  tctgtagggataagtgctaattgttgaaacagacaagtggttaatcacatctgctcggtc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  tctgtagggataagtgctaattgttgaaacagacaagtggttaatcacatctgctcggtc 502

                                                                        
Query: 605  gtcttgctggctagcagcagcctctatgctgctagaagtccataatgaagacacaagcgg 664
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501  gtcttgctggctagcagcagcctctatgctgctagaagtccataatgaagacacaatcgg 442

                                       
Query: 665  actgctttgacctgctttcactacagt 691
            ||||||||| |||||||||||||||||
Sbjct: 441  actgctttgccctgctttcactacagt 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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