BAC Information

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BAC

Clone NameMSMg01-304J04
Chromosome16 (Build37)
Map Location 73,535,511 - 73,536,215
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304J04.T7 (MSMg01no304_j04.b1)MSMg01-304J04.TJ (MSMg01no304_j04.g1)
ACCAG429812AG429813
length1,3421,319
length of high quality
(start - end)		708 (133 - 840)764 (91 - 854)
definitionCHROMAT_FILE: MSMg01no304_j04.b1 PHD_FILE: MSMg01no304_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:24 2005CHROMAT_FILE: MSMg01no304_j04.g1 PHD_FILE: MSMg01no304_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGTTTTNNNNNNNNGGCATTTGGCGCTATAGACTCCTATAGGGAG
AGGATCCGCGGAATTCTTGTCCTTACATTTCTCCCTATAAGCTCAAAGCA
GATATTAGATCCTGAGCCTTGCTCTATCTGTAGGAAAGAAATATCTCTCC
TCTCAGAAACAAGTTTCATTCCCAAACACACTGCCCCTGTGCAGCCTGCA
TTCTATCTGAAGGTAGCAACTCTTCCTTTGTTGGAGGCATCCAGTTCCCA
GGCAGTGAGGATGAAGGGAAGTTTCCAGACCACGGACACTTCTCTGTGTG
CAACATGACCTGTGCTTAACCAATGAAAGAACCTTTGCAAAAATCCAGAG
GATGAGGGTTATTTAGAGACAGTCTTGTTCCTGTCATCACCACAATCATT
TTATGTATTCATTTATGAACTTATGGATAATGAGTTGGATATTTTTCTTT
TCACTGTGATAAAATACCCGAGAGAAGACCCTTAAGAAACAGAAGCTCAT
CTAGGTGTGATGTTAAGATGAGTGTGGAAAAAAAATCCAAACCAAACAAA
CAGAAAAACAAAAACAAACAAACAAAAATACCCAAAACGAAGACATGGCA
TCCATCATAGCAAGGAAAGCATTACAGTTGGAATGGTGTGGCCCCTGGCT
GCAGAAGGTTTTCCTCACCAATTACTTTTTTAAATTATGATTTTTTAAAA
CATTCTGAGATTGTAATATTATTATATCATCTTTCTCTTTCTCTTTCTTC
CTTCCAACCCTTGGCATGTATCCTTCCTTCTTTCCTTCATGATTTCTTTT
TCTTTAGTTGTTGCTATGCGTATTTGTGTGCAGGAATACTTTTAAATATA
TAAGTGCAATGTGCTCAGTCCATATAGGATTTCTTATATGTATATGTCTT
CAGGAGNTCCCTCACCAACATGGCTGCCTGAACATAGTCTGAGCCAGGAC
CTGTCACTTTTTTAAGACAAGACCCGNGANANAGAGAGAAAGAAAGAAAG
AGAGAGANANNNNAGANAGCAAAACAAAAACAAGACAAAAAAAAACTTGG
GNTTAACCCTCCAAAATCTTTTCAGTGGAATCTTTCTACCAAAAAACCCC
CCCTCCGAGATTTTTAAGTTTTCCCGACAAGGGCCAGATAAATAAAAATT
TTAATCTTTTGCGAAAGGTCTAATTGAACCCCTTCCCTATTTAATTTGGG
GGAGGAAAAATTTTCTCTTTTTTCCCCACCAATAAAAATTTTTCTTTTAC
CCTTATGACATTTTCTTTTCTTATTAATGACAACAGTGAGAATTTCTCTT
CTTCATGATAACGCTTCTATATAAAAAAATATCTGTTCTTCG

NNCCCGCTCTTNNNNNNCCGCATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAACATGGGTACCAACCC
ATTCTGGCTCATCAAATACCTTAGCACTAAGTGTATATCTTCTCCCACAG
AGGCCAGATAAGGCAGTCCGGCTAGAAGAAAGGGGATCCAAAGGAAAGCG
ACAGAGTCAGAGTCAGTGCCCACTCCAAGTGTTAGGGGATCACATGAAGA
ACAAGTTGCAGACATGCAGCAAATGCATAGGGGGTAGAGGTCCAACCCAC
ACGTTTTGGTTGGTGGCTCAGTCTATGTGAGCCTCTATGGGCCCAGCTTT
GTAGGTCTTATTGTGGTGTCCTTGACCACTCCAGCTCTCTCATCTCTCAT
TCTTCCACAAGTCTCCCTGAGCTCCACCTTTGGTTTAGCAGTGAGTCTCT
GCATCTGTTTCCATCAGCTACTGGATGAAGCCTCTCAGAAGACAGTTATG
CTAGGATCATTTGTGCCAGCATAGCAGAGTATCATTAATAGTTAGATCTC
TTGCATAGTTTCAGTCTTGATTTGAACCAGCCACTGGTTGGACATTCCCT
CAACCTCAGCTCTCTCTTTATCTCCCTGTAGTTCTTGAAGTCAGGACAAA
TTTGAAGTCGAAGGTTTTGTGGGTGGATTATTGTCCCCCTCCCTCCATTG
GAAGTTCTGCCTGGTATGGGAGTGGACACTTCAGGGTCCATATCCCCCAC
TGCTAGTAGTCTGAGTTAGAATCACCTCCATAGACTTCCTGCCCACCTAT
CCCTTTTCTGGCACCTCCTAGTGATCCCTCTGCCCCACCCATTGACGAGT
TTTGCTCTATTTCCTCTACTCTCCCTATACCTGATTCCCCCCATAGCACA
TTTCCCCTTCCTATCCTATATCCCACTCAGTTTTCTCCCCCCATCCCCTC
CAAAAACAAATTTATTTCTCCCCCCCAGAAAAAATCAATCTCGTCCTCTG
GGCCCTCCTTGAATTTTTTTTGCTGAGCCCGGGAATTAAAGGGGATATAC
CCGCCCTTTTTGGTGGAAACCCCCTTTTAAAGGAACCCACCCTACTGGTC
CTTTGTGGTCTGGGAAAACCCTTCCCGCAGAGAATTTTTATTTTTCCTTT
CTCCTCAAAAACTCTGGGGCCTTTCCTCATTACGGAAACAAATCTTTTGT
GTTTGTCCCAGTTTTTCCCCCCCCCCCCATTAGAATAAAGTACTTCCCTT
GTTATATAACTATAGCGCCAGACATACAACAGCCTCGTGAGGGGCATCTA
CTATATCACTCGAATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_j04.b1 MSMg01no304_j04.b1 CHROMAT_FILE:
MSMg01no304_j04.b1 PHD_FILE: MSMg01no304_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:24 2005
         (708 letters)



>mm_chr16_73535311_73536419
          Length = 1109

 Score = 1313 bits (679), Expect = 0.0
 Identities = 700/709 (98%), Gaps = 5/709 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaagaaatatctctcctctcagaaacaagtttcattcccaaacacactgcccctgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaagaaatatctctcctctcagaaacaagtttcattcccaaacacactgcccctgtgc 260

                                                                       
Query: 61  agcctgcattctatctgaaggtagcaactcttcctttgttggaggcatccagttcccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctgcattctatctgaaggtagcaactcttcctttgttggaggcatccagttcccagg 320

                                                                       
Query: 121 cagtgaggatgaagggaagtttccagaccacggacacttctctgtgtgcaacatgacctg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgaggatgaagggaaggttccagaccacggacacttctctgtgtgcaacatgacctg 380

                                                                       
Query: 181 tgcttaaccaatgaaagaacctttgcaaaaatccagaggatgagggttatttagagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttaaccaatgaaagaacctttgcaaaaatccagaggatgagggttatttagagacag 440

                                                                       
Query: 241 tcttgttcctgtcatcaccacaatcattttatgtattcatttatgaacttatggataatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgttcctgtcatcaccacaatcattttatgtattcatttatgaacttatggataatg 500

                                                                       
Query: 301 agttggatatttttcttttcactgtgataaaatacccgagagaagacccttaagaaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttggatatttttcttttcactgtgataaaatacccgagagaagacccttaagaaacag 560

                                                                       
Query: 361 aagctcatctaggtgtgatgttaagatgagtgtggaaaaaaaa-tccaaaccaaacaaac 419
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 561 aagctcatctaggtgtgatgttaagatgagtatggaaaaaaaaatccaaaccaaacaaac 620

                                                                       
Query: 420 agaaaaacaaaaacaaacaaacaaaaatacccaaaacgaagacatggcatccatcatagc 479
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaacaaaaacaaacaaa----aatacccaaaacgaagacatggcatccatcatagc 676

                                                                       
Query: 480 aaggaaagcattacagttggaatggtgtggcccctggctgcagaaggttttcctcaccaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaggaaagcattacagttggaatggtgtggcccctggctgcagaaggttttcctcaccaa 736

                                                                       
Query: 540 ttacttttttaaattatgattttttaaaacattctgagattgtaatattattatatcatc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttacttttttaaattatgattttttaaaacattctgagattgtaatattattatatcatc 796

                                                                       
Query: 600 tttctctttctctttcttccttccaacccttggcatgtatccttccttctttccttcatg 659
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 797 tttctctttctctttcttccttccaacccttggcgtgtatccttccttctttccttcatg 856

                                                            
Query: 660 atttctttttctttagttgttgctatgcgtatttgtgtgcaggaatact 708
           |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 857 atttctttttctttagttgttgctatgcgtatatgtgtgcaggaatact 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1109
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1099
Effective search space:   767102
Effective search space used:   767102
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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