BAC Information

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BAC

Clone NameMSMg01-305H19
Chromosome16 (Build37)
Map Location 68,758,209 - 68,758,620
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305H19.T7 (MSMg01no305_h19.b1)MSMg01-305H19.TJ (MSMg01no305_h19.g1)
ACCAG430442AG430443
length1,3111,303
length of high quality
(start - end)
429 (29 - 457)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no305_h19.b1 PHD_FILE: MSMg01no305_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:29 2005CHROMAT_FILE: MSMg01no305_h19.g1 PHD_FILE: MSMg01no305_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGATCAGTGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CATCTGTGATCTCTTTACTTCCCTGAATATCCTGCCACTCTACCCTATCA
CCAAAAAGAATAGTTGATGATCTTGTCCTTTGTAAATTGTTCTGGCTATC
CTCTAATGGACAGTTGTCTGATTACACTAAAGAGCTAGTCAAAGAGTTGA
GAGAATACTGGGGTTGCTATATTCATCCCAATGAAAAAGGTGTCCAGGGT
AGGAAAAGATGGCCCATGTGCAGAATGATCCCTGGGAGCATACAGAAGAA
ATCACATTTTCCCATACCAGATGTCAAACCTCTCACAACTATGCAAGGCC
ACAGTGACAGAGGCCAAAAGAAAAGTCTTAAAGGGATGGACAAGGGATAT
TATATGCTTCTGAAAGAAACTTGCTTATTTTTACAAAGGCACACACCACC
TTTCATTTTTTTACCCCCCCCGGATCTGCCTCATTCTAACACTCTAAAAG
AAGAATACACCTTTTTATTTTTCTGAACTCCACTAAGTATCCTTTCATGT
TGATTTTCTTTCTTCCTTTCTTTCCCCCAAATTATCTCATTATCTCATTC
TGTCTTGGTCAGAAATGTCAGACAACACAATGAAGTATGAAACTAGACCT
ATGAAATTAATTATTTTCTCTCATCTTCCTCTTGTAGTCCCTTTCCTTCT
CTGATGTAGATGAAGGGAATATATTTTGCTGGCTGCTCTAATTCTTCTCA
ATAAGATTGTGTTACTCTTTCTAACACTCTACTAGAAAAATACACCTTTT
TATTTTTCTGAACTCCACTAAGTATCCTTTCATGTTGATTTTCTTTCTTC
CTTTCTTTCCCCCAAATTATCTCATTATCTCATTCTGTCTTGGTCAGAAA
TGTCAGACAACACAATGAAGTATGAAACTAGACCTATGAAATTAATTATT
TTCTCTCATCTTCCTCTTGGAGTCCCTTTCCTTCTCTGATGTAGATGAAG
GNAAAATATTTTGCTGGCTGCTCCAATTCTTCTTCAAAAGATTGGGTTTC
CCCTTACAACCCAAAATGGTTGGAACCATTTTGCCCGCTTCTTGGAAAAA
TTGTCTGTGCAAAACAAATCCAGGAATTGTTGGGCCCGCTTGGAGAATTT
CTTGTTTTCGTAACCAGTGATGGAATAAAGAGATAATTTTAAATCACGGG
AGGGGGGTATATTAATCTTGAAGGGGCTTATACCTCGGGATCTTTATGAG
AAACACCACCCCGAATCCTGTTTAAATAAAAAATATTTTTTTTCTTCCTG
GGGTCGTGTTT
NNGGGCGTGAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCTTCAGAGACTTGAAGTTCTTTTCATA
TAGACCTTTCACCTGCTTGGTTAGAGTCACACCAAGTTACACAATATTAT
TTGTGGCTATGGTGAAGGTTGGCATCTCCCTAATTTCTTTCTCAACCTAG
TTATTCCTTGAGTAGAGGAAAGCCAGTGATTTGGTTGAGTTAGTTTTATA
TCTAGCCACTTTTCTGACATTGTTTATCAGCTTTAGGAGTTCTCTGGGGA
AATTTTTGGAGCCACTTATGTATACAATCATATCATCGGCAAGTAGTGAT
ATTTTGACTTCTTCCTTTTCAATTTGTATCAGTTTGACTTCCTTTTGATG
TTTAATTGCCCTAGCAAGATCTAAAATTACTATGCTGAATAGATAGGGAT
TTTTTTTTCCCCCCCCCCTAGNCTTTGATTTTACTGAAAAAAAAAAGAGT
TCTCTCCATACAGTTTGATGTTTGATCCTGGCTTGCTGTATACTACTTTT
ACGATGTTTAGGTATGAATGGGCCTTGAATTCCTGATATTTCCAAGACTT
TTGAAGGGATGCTGAATTTTGTCAAATGCTTTTTTAGCATGTAATGAATG
ATCACGTAGTTTTTTTTTCTTTGCATTTGTTTATGTAGTGTATTACATTG
ATTGATTTCTGTATATTGAACCATCCCTGCATCCCTTGGATGAAGCCTAC
TTGATCATGATGGACGATCATTTTGATGTGTTCTTGGATACAGTTTGCAA
GAATTTTTTTTATATTATTATTAGGNATTTTCCTCATTTACATTTCCAAT
GCTACCCCAAAAGTCCCCCATACCCTCCCCACGACTTCCCTACCCACCCA
CTCCCACGGTTTGGGCATGGCGTTCCCCTGTACTGGGGCATATAAAGTTA
GTTTGCAAAAATTTTATTGACTATTTTTGCATTGATATTCCTAAAGAAAA
TTGGTCCGAAATTCTCTTTCTTTGGTGGGTCTTTGGGGGGCTTAGGGATA
AAAGAAATTGGGGTCTCATAAAAGGAATTGGGGAGGGAACTTTTTCGTTT
CAAATTGTGGGAAAATTTGAGAGAAATTTTTTTAAAGGGTCCAAAAACTC
TGCCAAAAACATATTAGAATGGGGGTTTTTTTTTTTTATTGTGGGAGAAA
AAATAAAGCGCTCTTCTTTTTAAAAATAGCACGGGTTAAAAGTAATATAA
ACCCTCCTCTCTCTCTCTCTTGGTGGTCAAAATGAAATTCCTCTCTTATT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_h19.b1 MSMg01no305_h19.b1 CHROMAT_FILE:
MSMg01no305_h19.b1 PHD_FILE: MSMg01no305_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:29 2005
         (429 letters)



>mm_chr16_68757992_68758822
          Length = 831

 Score =  716 bits (370), Expect = 0.0
 Identities = 401/412 (97%), Gaps = 2/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcatctgtgatctctttacttccctgaatatcctgccactctaccctatcaccaaa 77
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 218 gaattcatctgtgatctctttacttccctgaatatcctgccactctatcctatcaccaaa 277

                                                                       
Query: 78  aagaatagttgatgatcttgtcctttgtaaattgttctggctatcctctaatggacagtt 137
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 278 aagaatagttgatgatcttgtcctttgtaaattgctctggctatcctctaatggacagtt 337

                                                                       
Query: 138 gtctgattacactaaagagctagtcaaagagttgagagaatactggggttgctatattca 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtctgattacactaaagagctagtcaaagagttgagagaatactggggttgctatattca 397

                                                                       
Query: 198 tcccaatgaaaaaggtgtccagggtaggaaaagatggcccatgtgcagaatgatccctgg 257
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 398 tcccaatgaaaaaggtgtccagggtaggaaaagatggcccaagtgcagaatgatccctgg 457

                                                                       
Query: 258 gagcatacagaagaaatcacattttcccataccagatgtcaaacctctcacaactatgca 317
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 458 aagcatacagaagaaatcacattttcccataccagatgtcaaacctctcacaactatgcc 517

                                                                       
Query: 318 aggccacagtgacagaggccaaaagaaaagtcttaaagggatggacaagggatattatat 377
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 518 aggccacagtgacagaggccaaaagaaaagccttaaagggatggacaagggatattagat 577

                                                               
Query: 378 gcttctgaaagaaact--tgcttatttttacaaaggcacacaccacctttca 427
           ||||||||||||||||  |||||||||| ||||||||||| |||||||||||
Sbjct: 578 gcttctgaaagaaactgttgcttattttcacaaaggcacataccacctttca 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 831
Length adjustment: 9
Effective length of query: 420
Effective length of database: 822
Effective search space:   345240
Effective search space used:   345240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)