BAC Information

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BAC

Clone NameMSMg01-305I02
Chromosome16 (Build37)
Map Location 39,172,115 - 39,172,469
singlet/doubletsinglet
Overlap genenone
Upstream geneGsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I02.T7 (MSMg01no305_i02.b1)MSMg01-305I02.TJ (MSMg01no305_i02.g1)
ACCAG430450AG430451
length1,2811,264
length of high quality
(start - end)
359 (45 - 403)238 (116 - 353)
definitionCHROMAT_FILE: MSMg01no305_i02.b1 PHD_FILE: MSMg01no305_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:31 2005CHROMAT_FILE: MSMg01no305_i02.g1 PHD_FILE: MSMg01no305_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGCATCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCTGGCGAGATACTAGCTCGGGTGAGAGATAATAGTGGTGTAAA
ACTTACATCTCCACTATAATCAGTCAATACCTTAGACAACTGTTGGGCAC
TCACCTGCGTCTAGCACCAAGATAGGTAGCTGGAGATGCAAGAAGGGTTC
AATCCATCTGGGAAGTCAAGATGATCTACTGAAACAAAGAGCAATGCAAG
GCTATACCAGAAGGTGCCGTAGGGTGTGATGAAAGTGATGTAATCATCAT
GATCATGGTTGTATATGTAATTTTGATTGCTGTGTTACAACTGCTGATCA
ATATTGACTGGACTGAGAGTCTAGAGATGTTTGTGTGAGAATGGATTGAA
AATTTTAAATTAGTCTTATTGGTACTTTAAATAAGTACTAATCATCTGTC
TATGTTTTTTTTCCCCCCCCCCCNGATTATCAACCCTCAACCAAAAAATG
GGGGGGCATCTTTATATCACTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTACT
TATCTATCTATCATCTATCTTCTGTAATTTGTTTATCTACTTACCTATTA
TCTATCTATTTACCTATTACTTATCTATCTACCTATCATCCATCTATCTA
CCATCTCTCTATCTCTCTATCTCTCTCTCTCTCTCTCTCTCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTTCTATAGTAAGAGA
GACAGATGTGACCAACTGATTTCTAAAGACCTTTCTTCTTTTCCATTTAG
GAACTTAAATTTTTGATTACAGCCATCCACTGCGAGGGAACTTAAATTTT
TTTCTGCAAAGACCAAAAGGTGGAAAAACTTGCTAAGCTCTTCTCTAATG
CCATAGGGTATGCTAGTCCGGCCTGAAATTCTGATCCACTGGACTGAAGG
ATTGCAAAAACTGGGCCTGAAAACCCCTGGTAACTGTGATAAATCTTGGC
TGGTTCCTGTAATACATGGTGAGTAAATTTGGAACACTTCTCTTTTCAAA
AAATGTTATACAGGGAAAGGGTAAAACCTTTGGTGAAAAGCGATCCTCTA
AAAGATACCTTATTACCCAAACTGTTTCCCCCTAATAAAAATTCTTCTCT
CTTCCTGATGTCTTATTATAATAATGAGGTAATTTTTTCTCCCTATTTTT
GTACGGAACTCAACACCACTCCTCTCTCTTG
NNNCCCGTCACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTCTATACCCCACGTTTTGA
TTGGGTTGCTTGGATTTTTGGTGATTAACTTCTTTTTTTTAATTTTTTAT
TAGGTATTTAGCTCATTTACATTTCCAATGCCATACCAAAAGTCCGCCAT
ACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTG
GCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGTCCAATGGGCCTCT
CTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCGGCTAGA
GTCGAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATTT
TTTTGCAGATCCCTTTAGCTCCTTGGGGACTTTCTCTAGGACCTCCATTG
TTTTTTTTGCCCCCCCCCCCTAAGNNGACTGCCCCCAAAAAAAAAGAGGG
GGGCNNGGCCCCGGCNTAGNCTCACAAGAGACAGCTACATCTGGGTCCTT
TCAATAAAATCTTGCTAGTGTATGCAATGGTGCCAGCGTTTGGATGCTGA
TTATGGGGTGGATCCCTGGATATGTCAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAATCTGGCGGCTCCT
CATAAAATTGGACATATTACTACCGGAGGATCCAGCAAAACCTCTCCTGG
ACATATATCCCGGTGATTAACTTCTTGAGTTCTTATATATTATTTTGAAA
ATTAGCCCCCTATCGGATGTCAGGTTAGTGAAGATACTTTCCCAATCCTG
TAAATTGCTGATTTGTCTTGTACAATATGCCCTTTGCCTTCACGAAACTT
TTCCAATTCATGAGGTCCAGTTGCCATGCCACATTCACCCCTCGAACCCT
AATTGTTCCTGTCTGAAAAAATAAAAGGAATGGCACTGGAGAACCCTCCT
TGAAGAAAATAACGTCCTGCTGACTGGCCCAAATTGGAAACAATACTCAG
GGAACGTCCAACGCTTTGACCCTTTTTTTGACGCTTTGTCTTCCCTCCCC
ACAAGCATTTTAATATAACTGGCCTCGAAAAATCCCCACACAGCTCTTAA
TATGCACCAACATTATATTGCCCATTTTTTTGTCCCGGATCGTAGAACCC
TGTTTATCGTTTTCGGCAGCGTAACTATTCCTTTCAATACACCTTCTGTT
TTCTGCCCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i02.b1 MSMg01no305_i02.b1 CHROMAT_FILE:
MSMg01no305_i02.b1 PHD_FILE: MSMg01no305_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:31 2005
         (359 letters)



>mm_chr16_39171911_39172669
          Length = 759

 Score =  687 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgctggcgagatactagctcgggtgagagataatagtggtgtaaaacttacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctggcgagatactagctcgggtgagagataatagtggtgtaaaacttacat 264

                                                                       
Query: 65  ctccactataatcagtcaataccttagacaactgttgggcactcacctgcgtctagcacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctccactataatcagtcaataccttagacaactgttgggcactcacctgcgtctagcacc 324

                                                                       
Query: 125 aagataggtagctggagatgcaagaagggttcaatccatctgggaagtcaagatgatcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagataggtagctggagatgcaagaagggttcaatccatctgggaagtcaagatgatcta 384

                                                                       
Query: 185 ctgaaacaaagagcaatgcaaggctataccagaaggtgccgtagggtgtgatgaaagtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaaacaaagagcaatgcaaggctataccagaaggtgccgtagggtgtgatgaaagtga 444

                                                                       
Query: 245 tgtaatcatcatgatcatggttgtatatgtaattttgattgctgtgttacaactgctgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaatcatcatgatcatggttgtatatgtaattttgattgctgtgttacaactgctgat 504

                                                                  
Query: 305 caatattgactggactgagagtctagagatgtttgtgtgagaatggattgaaaat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatattgactggactgagagtctagagatgtttgtgtgagaatggattgaaaat 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)