BAC Information

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BAC

Clone NameMSMg01-305K15
Chromosome16 (Build37)
Map Location 37,813,337 - 37,813,711
singlet/doubletsinglet
Overlap geneFstl1
Upstream geneEaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709
Downstream geneLOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305K15.T7 (MSMg01no305_k15.b1)MSMg01-305K15.TJ (MSMg01no305_k15.g1)
ACCAG430558AG430559
length1,2891,293
length of high quality
(start - end)
417 (36 - 452)381 (74 - 454)
definitionCHROMAT_FILE: MSMg01no305_k15.b1 PHD_FILE: MSMg01no305_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:52 2005CHROMAT_FILE: MSMg01no305_k15.g1 PHD_FILE: MSMg01no305_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGACGCACTGCGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CACCCAAGTCATTTGCACAGGTAGCTCACTGACGTATGTTTGGAGGAGAA
CACCTTTTTCTTTCACCCTAACAACTAGTACTTGAAGAGTGCAATTAAAA
ATGTGAATGTTTTCACACACAGCATTTCACCTTACTGCATGGCTAACCTG
AGAAGAGCATGCATATGATTATTAGCTCCATTTTACAAACGAGGAATTTG
AGGCTCCAAAAGGTCAAATAATTTGCCTAAGTTCCCCAAACTAAAAAGAG
AGAGAGAGAAACCTCTATTCAGCCCACGGGTAACTAAGAACCCATTTGTA
AACACCTGGCGTCCCTCAAAGAGACCTATTATGGTTGGTGCCACTTAATT
TCTATATATGTTCCTAATTCCAGAGTCATATTATCCCTCTTTTACAGGTA
TTTTTTTTTACCCCCCCCCCCCCAGTAACAAACAGCCAAACAAAAAAGAG
GGGCCTCCAACCAAAGGCAAATGATTCCTTTATGTTTGGTTGATTCTTAC
ATCCGTATGCATTAAGGTTAGGGAAACTATAATGGGAATATGGATGTTAC
AATAGCAAGTGTAAGGCATTTAGATCCCATATGCAGCACTCATACCCAGC
CCCCTTCTTTATCTGCCACGAGTATTCTCTTGCAACCCCCTTTCCTGGGT
GCAGACATAAAACATTGAAGGTTAGAATTGTCTTGAGAATTAACTGAGTC
GCGCCATGTGCTGTGTAACAGGAAGCGACTGTCACTACAGGGGGGGATTT
ATTTTCAGTTTCCCCTGCAAATGATGTCACTGTCACCTTGGAATGACATG
TCCCCATTCCTTCCTGTCTTACTGACAATGGAAAGGTACCGCCCGTGCCT
ATTTGACTGAATGCATATTGCAAGGACCCCACACCCCTGAAGTTCCTTAA
AATTACCACAATTGGAATAAGTCCTGTTTAACTAATCCCTCCTTTACAGA
GCAAATTCCTGCCATCCGTGGCATATCCTTCCTTATTTTTACCACCCCTT
AACCTCTATTAAAAAAACCTTCTCTTTTCTGATAACCCCCCACTGCCCCC
TCCTGTGAAAAAAAATTCCTACTTAAATTATTAAACCCCTCACAATAACT
CTTTATATACTCTTCCATATTCACCATCAATTTTTCTTACTCTACTCACT
ATCCTCAACCTTTTATTATCTCATTTCTTTCATATACCATTGTATCATAT
CTTTTTCTCCTACATAATATATTTACCTCATCATCATAT
NNNTTTGATGACGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGTAGAAGGAGAAAAAATGAAAATA
AGCTATTTCAGAGCCCTCCTAGGGACAGACGGAAAACGGGAGACGTCCTG
CTTCCTCTCTGGCTCCTATGGAAATATTTTTAGCTTCGAATAGGATATCT
GTGTTCTATTGTCTGTTTTTCGGTGCACCAAATTGTCTATATGTTAATTC
ATGTTTGTTTTTGCTTGGATGATTGAATGATTGTTGTTCTGTGTTTCATG
TTGAAAAGTATAAAAAGCAGTCTCAGTCTGCACAGCAAAAATTGACAAGT
TAGCTGCACGGTGGCTGGGAGTCAAGTACAGCTGAAAAAGCCCTGCTGAG
GTTTTATTGCAAATGGAGCTTTTAAAGGGGCAGGCAGCCTTTTGCTTGTA
TTTTTTTTTTTCCTCCCCCCCGGAAACTCAAGGTTGCCCTTAAAAAAAAG
GGGGTAGGAAAACAGGTAATATGCAAAAGCAGTGTACAAAGGGTAGAAAG
AGTAGGTTTGAAAATAAAGTACATATCTTTACAAATAGAAGGAAAACCCT
TTCAAGGTATAATAGATACAGGAGCAGATAAAAGTATTATATCTAGTAAG
TGGTGGCCTGCTTCTTGGCCTGTTAATCAATCGACACATAGCTTACAAGG
ATTAGGATATGAGGCTACCCCAACTATAAGTGCAAAATCCTTACAATGGA
AAGATAAAGAAGGAAGGACAGGGCTTTTTAAACCTTATGTACTCCCTTTA
CCTGTAAACTTATGGGGGAGAGATGTGTTATCAGCTATGAACTTTATATT
GACTAATGATTACTCTCAGAAAAGCAAGGATGAAAGGAATGGGATATATA
CCTGGACTAGGTCTTGGAAAAAATTGCAAGGTAAATTTCCCCAGTTTAAG
CCCCAGAAAAGGCAGACAAGAAGGGGCTGGGATTTTCTAGGGCCACTGAA
AAGGCTTTTGCCCTTCCTGGCATACGAAGAACCGGGGTAGGGCCCTCAGG
GCTTTATCCTCTGAAAATTAAGGCGCTTTAGAATTTTCCAGAACCATTTA
ACCGGGGAAAGGGAACCCCCCTCACCCTCTGGAAATCCCCCTTTTTTGTT
TAAAAAAAACCACCNAATGGGATTGTTTCTTTCCTTATACCTCTTACTTA
ACCTCGTTTTTGCTCCGCCAAAAAACACCCTCTCTTCTCCCTTCCTCATT
GGAAATTAATCAATAACAGATTGTTTTTTTTATAAAAAAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_k15.b1 MSMg01no305_k15.b1 CHROMAT_FILE:
MSMg01no305_k15.b1 PHD_FILE: MSMg01no305_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:52 2005
         (417 letters)



>mm_chr16_37813328_37814146
          Length = 819

 Score =  567 bits (293), Expect = e-166
 Identities = 345/375 (92%), Gaps = 22/375 (5%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattc-acccaagtcatttgcacaggtagctcactgacg-tatgtttggaggagaacac 68
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gaattcaacccaagtcatttgcacaggtagctcactgacgttatgtttggaggagaacac 325

                                                                       
Query: 69  ctttttctttcaccctaacaactagtacttgaagagtgcaattaaaaatgtgaatgtttt 128
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 ctttttctttcaccctaacaactagtacttgaagagtgcaattaaaaacgtgaatgtttt 265

                                                                       
Query: 129 cacacacagcatttcaccttactgcatggctaacctgagaagagcatgcatatgattatt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacacacagcatttcaccttactgcatggctaacctgagaagagcatgcatatgattatt 205

                                                                       
Query: 189 agctccattttacaaacgaggaatttgaggctccaaaaggtcaaataatttgcctaagtt 248
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 agctccattttacaaacgagcaatttgaggccccaaaaggtcaaataatttgcctaagtt 145

                                                                       
Query: 249 ccccaaactaaaa--------------------agagagagagagaaacctctattcagc 288
           |||||||||||||                    |||||||||||||||||||||||||||
Sbjct: 144 ccccaaactaaaaagagagagagagagagagagagagagagagagaaacctctattcagc 85

                                                                       
Query: 289 ccacgggtaactaagaacccatttgtaaacacctggcgtccctcaaagagacctattatg 348
           ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||
Sbjct: 84  ccacgggtaactaagaatccatttgtaaacacctggcttccctcaaagtgacctactatg 25

                          
Query: 349 gttggtgccacttaa 363
           |||||||| ||||||
Sbjct: 24  gttggtgctacttaa 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 819
Length adjustment: 9
Effective length of query: 408
Effective length of database: 810
Effective search space:   330480
Effective search space used:   330480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)