BAC Information

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BAC

Clone NameMSMg01-305L13
Chromosome16 (Build37)
Map Location 87,045,302 - 87,045,567
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305L13.T7 (MSMg01no305_l13.b1)MSMg01-305L13.TJ (MSMg01no305_l13.g1)
ACCAG430597AG430598
length1,3171,312
length of high quality
(start - end)
267 (505 - 771)327 (75 - 401)
definitionCHROMAT_FILE: MSMg01no305_l13.b1 PHD_FILE: MSMg01no305_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:01 2005CHROMAT_FILE: MSMg01no305_l13.g1 PHD_FILE: MSMg01no305_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGTCATTGGCGCTATAGACTCCTATGGGAGAGGATCCGCGGAATTC
CCAGGCCCTTACATGTCTGACAAGTTGTTCTGAGAACCAGTTGAAATGGT
ATATGTGACATCACTCAAAATCTCAGTGCATATCATTGAACATAAGGAAT
AGCTGAGAAGATTTGAGGTTATTTAGCCAGAAAATGAGAACAATCAAATG
AACAGACTCAATGTCATCAAATACTTCAAGACTGAACCACAGAAATGGTT
CTGGATAATCAGCACAAATGTTTGTGCACACACACACACACACACACAGA
CACACACACATACACACACAGAGAGAGCAGGAGAGCAAGAGAGAGGGGAG
AGAGAGAGAGAGAGCTGCATACATGACCAGCAGCTGTTATGAATGACAAT
TTTTTTAACTTCAGTCTCACTAAAAAATATTTCTAGTAAACCTTTTGGAA
GCTTTTTTTTTCCCCCCCCCCAAACATCCAGGCATGACTTAAAAGAAAAA
GGGCGGGTGAGGCTAAGGAGAAAGTTCATGTATTAAGTTGGCAACTGAGC
CATGGGAGCTACACAGTATCTTCCAAAGTAAAAAAATCTGGTATATGAAA
CATGTAGAGTATTTATATTTTCAATTCTTTCTCCTTAAATATTGAAAGTA
CCTTGAGTCTGTTTTCACAGCACTACGAGTTCTTCTCACAAGGGCAACAA
CCTGAACCTTTCATCGCCTCTGCTTCAGGGAGAAAGTAACAAAGCAGACG
AAACAGCAGTGAGCATGGCAAATTAATCAATCTGAGTGAACAGCCATGCT
GCAGGAAGAGGTACGAAAGACACAGAGAGGATCAGCACTATGCCTACACA
AAATAAATCCTGCACACAATAAAGAAACATGTCATGTGATTTGTGTTTAA
CCAAATTCACAGGATCTATGATGCTAGGGTCTTCATATTGAGCTCTGAGT
CTGTAAACTTACCCAATTAAAAATGATTATCAGGGTAACTTATTGCATCC
TTGAAAAACTGTGGAACACTTATGGTAGTAAACTCCTGTAAGCCTAGTTG
ACCCCCCCACCATGCCTTTGGATTTTTTCCCGACAGGTTCCAAAAATGGT
TTAAATTGCCCCCCGGGAATGCCCCAAAATTTTCTCTGACTCTCAAATTT
TTTTCTTCAAAACACCTGGTGGGGGGTGAAAGGGGTATAATAAAAAAGGC
TTTCTAAATATTGTACCCCCACCTGTCTTTAGAACAGAATAATTAACCTT
TTTTCCTCCACCGGGCTCCTAACTAAGGAGAATTTTGTAAACCGTGGGTT
CTCAAAGAACATAGTAA
NNNGGATTTCACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCTTAACCAAGAAGTTATTTGTC
ATTGATACTTACTTGATATCAATGTTTAGTATTTATCAATGGAGTGTCAC
TGGGTGTATCAACCACACTTTGGGGAAGACCTCATGTCTAGGAGTACAAA
ATGCAATCTATGCTTTTTGTGGGCTTTTTGTTTTGTTTACTTGTTGTTGT
TTGTCTTATTGTACTGGAGGAATGAACGTCAATTAGAGAATGCCTCCATA
AGAAGGGCTGTAGACAAGTCTGTAGGGCATTCTCTTTTTTTTTTTTTTTT
CATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAA
ATTTTTCTTTATCCACCCACCCCCACTCCCCTGCCCACCCATTCCCCCTT
TTTGTTTTTTTTTTCCCCCCCCCCGGGGGNATATAAATTTTGAAAGAAAA
AGGGGGCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATA
TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTT
CCACCTATAGGGTTGCAAATCCCTTTAGCTCCTTGGCTACTTTCTCTAGC
TCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCC
ACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGTTACAT
CTGCGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTT
TGGATGCTGATTATGGGGTGGATCCCTGAATATGGCACTCTCTAAATGGT
CCATCCTTTCATCTCATTCTCAATCTCCGTCTTTGGTACTCTTTCAATGG
GGGTTTTGTTCCAAATCTAAGGAGGGGCTAAATGCCCACTTTCAGTTCTT
CTTCTTCTTGAGTTTCATGTGTTTACCAAATAAATTTTAATCTTGGCGAT
CCTAGATTTGGGCCTTAATTCCCCCTTATCATGGAAATACTTTGTGGGAT
TTTCTTTGGGAAGGGATTACCTCCCCCTAATTGTGCCCTCCAGGTCACTT
TTTTTGATAGATAATTCAGGTGATTTCTTAATAATTTATTTGAGAAGGTC
TAACCATTTATGGTAGGATCATCCTGACTAGGTCTATTTTGTATTTTAAA
AATATCGAATAGACTTATGTATATGTCGATTATTACTTCTTAATCTCTTT
TTTATTTTCCCAGTACTCCACTATTATATTCTTTATTTTTCTATTAATAT
TTCTATAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_l13.b1 MSMg01no305_l13.b1 CHROMAT_FILE:
MSMg01no305_l13.b1 PHD_FILE: MSMg01no305_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:01 2005
         (267 letters)



>mm_chr16_87045101_87045767
          Length = 667

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggtgaggctaaggagaaagttcatgtattaagttggcaactgagccatgggagctacaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtgaggctaaggagaaagttcatgtattaagttggcaactgagccatgggagctacaca 261

                                                                       
Query: 62  gtatcttccaaagtaaaaaaatctggtatatgaaacatgtagagtatttatattttcaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtatcttccaaagtaaaaaaatctggtatatgaaacatgtagagtatttatattttcaat 321

                                                                       
Query: 122 tctttctccttaaatattgaaagtaccttgagtctgttttcacagcactacgagttcttc 181
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 322 tctttctccttaaatattgaaagtaccttgagtccgttttcacagcactatgagttcttc 381

                                                                       
Query: 182 tcacaagggcaacaacctgaacctttcatcgcctctgcttcagggagaaagtaacaaagc 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcacaagggcaacaatctgaacctttcatcgcctctgcttcagggagaaagtaacaaagc 441

                                     
Query: 242 agacgaaacagcagtgagcatggcaa 267
           ||||||||||||||||||||||||||
Sbjct: 442 agacgaaacagcagtgagcatggcaa 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)