BAC Information

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BAC

Clone NameMSMg01-306F11
Chromosome16 (Build37)
Map Location 28,537,504 - 28,709,542
singlet/doubletdoublet
Overlap geneFgf12
Upstream genenone
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306F11.T7 (MSMg01no306_f11.b1)MSMg01-306F11.TJ (MSMg01no306_f11.g1)
ACCAG431036AG431037
length728727
length of high quality
(start - end)
240 (128 - 367)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no306_f11.b1 PHD_FILE: MSMg01no306_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:06 2005CHROMAT_FILE: MSMg01no306_f11.g1 PHD_FILE: MSMg01no306_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,709,304 - 28,709,542)(28,537,504 - 28,537,979)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAGATCTCCTATTTCAGAGAAATACTGTACTTGGAGTTATT
GTATTATTATAAATGGTTTATTTCACCACCAGACAAGTGAAGAACCACAT
AGGTGAACATCTAGGAGGGTTTCAGCCATAGCATGCTTGGGCCTTCACCC
CATGCAACCAAGGTACATCATCCCTTGGCCTGTGAATGTGTTCTCCGATC
AAGAAGCTCATCTGAGCTGTGAGGTCCAGAGGTTTTGTTAGGGTTTCACT
GTATAGCCGTGATTTGCTGAGTTATTTGTCACTTAAATGAAGTAACTCTT
TGCTTCCCACCCTTCTTCATGTTCCATGCCTCACACTCTAAAACCACCCA
ATTGATCCTCCTGGCAGGGCCAGTCCATGTACAGACATTTGTACTCAGGT
GTGACTCAAGAGTCACCACCAATGGCAGGCACTTACTCACAGAAATTCCC
AGAGTTAAGTGCCTTTAGACACCAGGATAAGGAACAGAGAAAGGATTATC
TATTCTTGTTTCTAGAAAGCTTTATTTCAGATGGAAAGGTCCTAGTTCTT
AGAAAAACACATAGAATGTAAGAGAGAGAGATAAAACTTANAAACTACTT
TGACAAAACCTTTCTCTTGACAAATGAAGACACGGCGCCCTAGGGGCAAA
GGGTGTTTGGCCCCCAGGACAGTTGAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAAAACAAAGAATTGACT
TGAATGTCAAAGTTAGAGATTCCAGAGGAAGGAATTATAAAACCACCAGG
CCTTAGTGCAGAAAGAAGTCCAGCATGGCTGAGGAAATAAAGACGTGAGT
AAGAAACAGCAGGGAGAGCATTCCCAGCGGACTGTGCAGGGAGACAAGAG
TGTCTTCAGAGGCTGGGCTGACTTACAAAGGGCTTGCAATTTTACTCTGG
GTAAGTGAAATACCAGTGAGGGATATAGCAACATAGAAACACAAAGATGC
CAGCTAATTTACACTTGAAAATATCAGACTGAAATGAGCTAATGTGTCGC
ATGTACCAATGATGTACAAACACAGCAGACTCAACAATGGTCAGTAATAC
AGTCTCTTCTCCTGTGAGCCAACACTGCCTGAGAGAGAGCCACAGAAAAG
GGATTACTTATTTAAGGGTTTTATATTTGGCTTTTCTACCAAGTTGAAAG
ACTTTACCTAAAATGTCTATTATCGGAGTCTCTGGGGATTAAAATGGAAT
TCTAGAAGATCCAGTGACGTTGAACTTGCATTCCTGCCTAGAACCACCTT
CCTGGAACCGGGAACCCTGCTCCCTTTTCTCCACTTGGAAAGATCCTTAA
TCATACATTTGTCACAGCCACCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_f11.b1 MSMg01no306_f11.b1 CHROMAT_FILE:
MSMg01no306_f11.b1 PHD_FILE: MSMg01no306_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:06 2005
         (240 letters)



>mm_chr16_28709104_28709743
          Length = 640

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagacaagtgaagaaccacataggtgaacatctaggagggtttcagccatagcatgct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accagaccagtgaagaaccacataggtgaacatctaggagggtttcagccatagcatgct 380

                                                                       
Query: 61  tgggccttcaccccatgcaaccaaggtacatcatcccttggcctgtgaatgtgttctccg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 tgggccttcaccccatgcaaccaaggtacatcatcccttggcccgtgaatgtgttctccg 320

                                                                       
Query: 121 atcaagaagctcatctgagctgtgaggtccagaggttttgttagggtttcactgtatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcaagaagctcatctgagctgtgaggtccagaggttttgttagggtttcactgtatagc 260

                                                                      
Query: 181 cgtgatttgctgagttatttgtcacttaaatgaagtaactctttgcttcccacccttct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgtgatttgctgagttatttgtcacttaaatgaagtaactctttgcttcccacccttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no306_f11.g1 MSMg01no306_f11.g1 CHROMAT_FILE:
MSMg01no306_f11.g1 PHD_FILE: MSMg01no306_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:06 2005
         (476 letters)



>mm_chr16_28537304_28538179
          Length = 876

 Score =  882 bits (456), Expect = 0.0
 Identities = 471/476 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccagaaaacaaagaattgacttgaatgtcaaagttagagattccagaggaaggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccagaaaacaaagaattgacttgaatgtcaaagttagagattccagaggaaggaatt 260

                                                                       
Query: 61  ataaaaccaccaggccttagtgcagaaagaagtccagcatggctgaggaaataaagacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ataaaaccaccaggccttagtgcagaaagaagtccagcatggctgaggaaataaagatgt 320

                                                                       
Query: 121 gagtaagaaacagcagggagagcattcccagcggactgtgcagggagacaagagtgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtaagaaacagcagggagagcattcccagcggactgtgcagggagacaagagtgtctt 380

                                                                       
Query: 181 cagaggctgggctgacttacaaagggcttgcaattttactctgggtaagtgaaataccag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 381 cagaggctgggctgacttacaaagggcttgcaattttactctgggtaagtgggataccag 440

                                                                       
Query: 241 tgagggatatagcaacatagaaacacaaagatgccagctaatttacacttgaaaatatca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggatagagcaacatagaaacacaaagatgccagctaatttacacttgaaaatatca 500

                                                                       
Query: 301 gactgaaatgagctaatgtgtcgcatgtaccaatgatgtacaaacacagcagactcaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 gactgaaatgagctaatgtgtcgcatgtaccaatgatgtacaaacacagcagactcaacg 560

                                                                       
Query: 361 atggtcagtaatacagtctcttctcctgtgagccaacactgcctgagagagagccacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtcagtaatacagtctcttctcctgtgagccaacactgcctgagagagagccacaga 620

                                                                   
Query: 421 aaagggattacttatttaagggttttatatttggcttttctaccaagttgaaagac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagggattacttatttaagggttttatatttggcttttctaccaagttgaaagac 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)