BAC Information

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BAC

Clone NameMSMg01-308B11
Chromosome16 (Build37)
Map Location 39,368,816 - 39,369,107
singlet/doubletsinglet
Overlap genenone
Upstream genePopdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308B11.T7 (MSMg01no308_b11.b1)MSMg01-308B11.TJ (MSMg01no308_b11.g1)
ACCAG432264AG432265
length728735
length of high quality
(start - end)
318 (46 - 363)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no308_b11.b1 PHD_FILE: MSMg01no308_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:19 2005CHROMAT_FILE: MSMg01no308_b11.g1 PHD_FILE: MSMg01no308_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATGATTCCAATGTAGACTGAAAACTGACAGCTCTCTAGAACC
AGACAGGGACTCCAGTATTAGACTAGAGCTGTTGAGATATCTAGTCTTTT
ATGGACTGAACAACCACTGGTTGTTAGGCCTTTCTTTCAGGATATAGCAA
TTGTTAAACTACTCACACCACAGTCTATAAGAAATTCTAATGATTTGGTA
TAGGGTCGGGGAAAAGGACTGAATATCTGAGGGCCAGCAGAAAGAATGGA
AACAGGCAACTTAGGGAGGAAGGAAGTTGGGGGGACCCTCCAGAATATAC
CAGAGACCTGTTTTTTTTTACACCCCCACCCCTCACACGGAGGGACCTTA
GATGAAATGCCCTGCACCCCCCCCACAGAAAACTTATAGAGCCCACCTCC
AGCAGAAAAGCAAGGTATTGAGTGAGGGGTGGGGTTGCCATTCCACAATC
AAAACTCTGACCCATAATTGTTCCTGTCTGAAAGAACTGCAGGGATGGAA
ATGGAGAAAACCCTGAGGAAAAGAAGGTCCAGTATCAGGGCCAAAGTGGA
ATCCAGCTCAAAGGGAGGCCCCAAGGCCTGACACTATTACTGAGGCTACA
GAGCGCTCACAAAAAGGAACCTATCATGACTGCCCTCTGAAAGACCCAAC
AAGCAGCTCAAAGAGTCCGATGCTCATA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAATATCCTGCAGGGTTGAGG
GGGTGTAAGAGAAGGCAGCACAGAGCAAATAATACTTATGTAAGGGCAGG
AAGCAGAGATTTACTAATTTACATCTTTAAAGAACCAGCAAAACATGTCA
ATCTAGTCTTCTCCAGAGATTTTTATTTAGCAATGAAGATTTAATTATTA
TCTTGAAACTTGAAAGCTCTGTTAACATGGAGCCTGTCTGCAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGA
GAAACAATAGTCTATTTTGTCATTCCTCTCCCCCCCCCTGAGAAAGAATG
TATTAATATTCAGTTTCCTGCCCCCCCCACTAAAAACAACTGTGGTTTCA
GCGGGCAGACACAATTAACTACCTCTTATCATCTGTTGATCTTTTTTTAA
TAAATATTTTTTCTTCATATGTATGAGTGTTTTGCTTGCATGTATGCTTG
TGTACTACTTCTAACCCTGGTGCCCAGACCAGTACGATGGTTCGCCATAG
ATCCTCTAGATTTACAGTTACACATGGTTGTGTCTCGTTTTGTATCGTGA
TCGTCATACCCACCCTGGGTTTTTCGGTATTCGCCTTCCGCGTATATTTT
ACCTGGAGTACTCTCTCCCCGCCCCTCATTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_b11.g1 MSMg01no308_b11.g1 CHROMAT_FILE:
MSMg01no308_b11.g1 PHD_FILE: MSMg01no308_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:19 2005
         (286 letters)



>mm_chr16_39368616_39369301
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 285/292 (97%), Gaps = 6/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaatatcctgcagggttgagggggtgtaagagaaggcagcacagagcaaataatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaatatcctgcagggttgagggggtgtaagagaaggcagcacagagcaaataatact 260

                                                                       
Query: 61  tatgtaagggcaggaagcagagatttactaatttacatctttaaagaaccagcaaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtaagggcaggaagcagagatttactaatttacatctttaaagaaccagcaaaacat 320

                                                                       
Query: 121 gtcaatctagtcttctccagagatttttatttagcaatgaagatttaattattatcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaatctagtcttctccagagatttttatttagcaatgaagatttaattattatcttga 380

                                                                       
Query: 181 aacttgaaagctctgttaacatggagcctgtctgcagagagagagagagagagagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttgaaagctctgttaacatggagcctgtctgcagagagagagagagagagagagaga 440

                                                               
Query: 241 gagagagagatagagagagagagagagagagagaga------aacaatagtc 286
           |||||||||| |||||||||||||||||||||||||      ||||||||||
Sbjct: 441 gagagagagagagagagagagagagagagagagagagagagaaacaatagtc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)