Query= MSMg01no308_p24.b1 MSMg01no308_p24.b1 CHROMAT_FILE:
MSMg01no308_p24.b1 PHD_FILE: MSMg01no308_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:28 2005
(695 letters)
>mm_chr16_76771791_76772884
Length = 1094
Score = 1172 bits (606), Expect = 0.0
Identities = 669/690 (96%), Gaps = 1/690 (0%)
Strand = Plus / Plus
Query: 6 ggaattccatctttatcccacgaattggctcatattcaaaagcccacagttttatgcttt 65
||||||||| ||||| |||||| |||||||||||||| |||||||||||||||| ||||
Sbjct: 206 ggaattccacctttaccccacggtttggctcatattcagaagcccacagttttatacttt 265
Query: 66 caaactccatgtggactcgcaggactcaaagctcctcttcacatggttctagaagacatg 125
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaactctatgtggact-gtaggactcaaagctcctcttcacatggttctagaagacatg 324
Query: 126 cgcagctctgccagctctccttgtcctggattcatgcttgtgcttgatctagccactctt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgcagctctgccagctctccttgtcctggattcatgcttgtgcttgatctagccactctt 384
Query: 186 gctggcttggcagtgtaagcacgagtgtgttcgaatgggcttttgtatcttattcagcgt 245
||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctggctcgggagtgtaagcacgggtgtgttcgaatgggcttttgtatcttattcagcgt 444
Query: 246 tttaaatatttctcaatcaacaggttttgcaggattgcaatgtattttaccacagctggt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaatatttctcaatcaacaggttttgcaggattgcaatgtattttaccacagctggt 504
Query: 306 agtaacatttttaagttggttttctgtgtggaagggtacatacattaaaaggccctatac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtaacatttttaagttggttttctgtgtggaagggtacatacattaaaaggccctatac 564
Query: 366 atatgaaaatcacaacacgaggcttttttttctatgaacatattccgccatatagatgtc 425
|||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 atatgaaaatcataagatgaggcttttttttctatgaacatattctgccatatagatgtc 624
Query: 426 atacatacacactgatggaatgtgaaggaaatgttcatttatgcatacagcaggtgacat 485
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct: 625 atacatacacactgatggaatgtgaaggaaatattcatttatgcatatagcaggtgatat 684
Query: 486 aatcaagacgtgtgatgacagactctgaactgctcttgtgggaatgccctatgaaaaaga 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatcaagacatgtgatgacagactctgaactgctcttgtgggaatgccctatgaaaaaga 744
Query: 546 aatcctgctgacagagcagaatctcactcaaacttcacaaccatattgccttctcgcccg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatcctgctgacagagcagaatctcactcaaacttcacaaccatattgccttctcgcccg 804
Query: 606 cagggtgctcgctgacacgacagcaaccaggtgacaggatcacggcttttagaagggcac 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagggtgctcgctgacacgacagcaaccaggtgacaggatcacggcttttagaagggcac 864
Query: 666 actgtgtttggtcatatgtcactgctgccc 695
|||||||||||||||||||||||| |||||
Sbjct: 865 actgtgtttggtcatatgtcactgttgccc 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1094
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1084
Effective search space: 742540
Effective search space used: 742540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_p24.g1 MSMg01no308_p24.g1 CHROMAT_FILE:
MSMg01no308_p24.g1 PHD_FILE: MSMg01no308_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:28 2005
(292 letters)
>mm_chr16_76848636_76849327
Length = 692
Score = 505 bits (261), Expect = e-147
Identities = 284/293 (96%), Gaps = 4/293 (1%)
Strand = Plus / Minus
Query: 1 acatgaaaagctgctgggatttgtgttttatattttaattttcctcatatgagtgaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acatgaaaagctgctgggatttgtgttttatattttaattttcctcatatgagtgaaaat 432
Query: 61 aatgtatcttgttattaaatgaaaatctttagtggttgaatttctcttcaaggtttcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgtatcttgttattaaatgaaaatctttagtggttgaatttctcttcaaggtttcagt 372
Query: 121 ttctgtgtccaatattgaaaatgaaatttatctactctaaagttttttttttttcagagt 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 371 ttctgtgtccaatattgaaaatgaaatttatctactctaaagattttttttt--cagagt 314
Query: 181 cattttgcttcggatctaagagtgattt--aagtgcgacaaaactcatgattgtttaata 238
||||||||||| ||| ||| |||||||| |||||| |||||||||||||||||||||||
Sbjct: 313 cattttgcttcagatttaacagtgatttttaagtgcaacaaaactcatgattgtttaata 254
Query: 239 tttgcaattggagtttagaaaaatatctcccctagtgtaattacttaatgaat 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttgcaattggagtttagaaaaatatctcccctagtgtaattacttaatgaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
