BAC Information

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BAC

Clone NameMSMg01-311B11
Chromosome16 (Build37)
Map Location 8,023,714 - 8,024,027
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B11.T7 (MSMg01no311_b11.b1)MSMg01-311B11.TJ (MSMg01no311_b11.g1)
ACCAG433691AG433692
length748739
length of high quality
(start - end)
318 (50 - 367)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no311_b11.b1 PHD_FILE: MSMg01no311_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:51 2005CHROMAT_FILE: MSMg01no311_b11.g1 PHD_FILE: MSMg01no311_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTGGTTGACCTATTCCTTTCCAGATAGGCAGAAAGAGGTA
GAATTTCATCTCTTATAGAGAACTACTACTTTACACAGGTTCAAGTAATT
TAATTTGGGCTTGACCTCCAAAACCTTTGTGCTGAAAGACATACAAAGGA
CTATTTCTCTCTGCATTCAAATGGGGCACCATGGAGGAACAGCAACCAAT
GCCTAATACCCTGCAGTGTGGATACTGGTTTTCATCATGTAACACAGACA
CCAGGCAGGATAAAGGAGGTTGATCCTTATAAGAGATTCCTGGGAACATA
TGCTTAGAGTATATAAGATTTTTATTTTCCCCCCCACCCTCCTTCCCTGT
GTGTGTGTGGACACGCATGTGCCCCCCCCCAAAAAAAAAAAATAGGGGGG
GGGGGGGGTGTGTGCCTGTGCATGCATGTGGAAGTCAGAGGAAAGATAAC
CTTGGATGCTCCTCTGAGGAACTATTCACCACCTTTTTATGTGTCAGCTC
TCTCACTGGTCTGGATCTTGCTTGCTAGGTTGCATGGCCCATACCGCCCA
TGATCCCCCTGTCCTCCTGCCTCTGTCCTCCCCAGTGTTGGGGGTTATAA
CTGCTAACCCCTTGATCTCTCTTACGGCGGATAACTGGGGATAAAAATTC
AGGCCCATTACGTTTTGCAAAGTTGCATTACTTCTCCCAACCTCTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTATTCAATTCAAGAAAGTT
GTTAACTTCTTCATTTCTGGCTTAAACAGTTTTTTATTCAATAGAGAACT
GTTTAATTTCCATTAATTTGTAAGCTGTTGTTTCTGTTGTTGTTGATATC
CAACTTTAATCTATGGGAGTCTGATGGCATGCATGGAGTTATTTCAATTT
TCTTGTACTTGTTGAGATTTGCCTTCTATACAAGCATATGGCCAATTTTG
GAGAAAGTTCCATGAGGTGCTGAAGAGAAGGTTTCTTCTTTTGTATTTGG
GTGAAATGTTCTTTTTATATCCCCCACCTCCACTTGGTTTATAACATCCA
TTAGCTCCAGCAACCCCCCCCCTAGAATATTGTCTGGCTAACCTGTCTGT
TCATGAAAGTGGATTATTGAAGTCTCCCACTATCAGGGTGTGGGGCTCAA
TCTTTGATTCAAGTAGTGTTTGTTTTGCAAATGTGGGTGCCCTTGTGTTT
GAGGCACAGATGTTAAGAATTACAATGTCACCTTGGTGGGTTTATCCTTG
GCGAGTATGTCCTTCTCTGTCTCTTTGGATTATTTTTAGTTTGAATTATA
TTTTGTTAGATATTAAATAGCTATATCTACTTGCTTCCTACGTCTGCGTC
ATTTTGAATGTTTTTTTTTACAATAACCTTTACCTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b11.b1 MSMg01no311_b11.b1 CHROMAT_FILE:
MSMg01no311_b11.b1 PHD_FILE: MSMg01no311_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:51 2005
         (318 letters)



>mm_chr16_8023510_8024227
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattggttgacctattcctttccagataggcagaaagaggtagaatttcatctct 64
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 518 gaattcattagttgacctattcctttccaaataggcagaaagaggtagaatttcatctct 459

                                                                       
Query: 65  tatagagaactactactttacacaggttcaagtaatttaatttgggcttgacctccaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatagagaactactactttacacaggttcaagtaatttaatttgggcttgacctccaaaa 399

                                                                       
Query: 125 cctttgtgctgaaagacatacaaaggactatttctctctgcattcaaatggggcaccatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cctttgtgctgaaagacatacaaaggactatttctctctgcattcaaatggggcaccatg 339

                                                                       
Query: 185 gaggaacagcaaccaatgcctaataccctgcagtgtggatactggttttcatcatgtaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 338 gaggaacagcaaccaatgcctaataccctgcagtgtggatactggttctcatcatgtaac 279

                                                                       
Query: 245 acagacaccaggcaggataaaggaggttgatccttataagagattcctgggaacatatgc 304
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 278 acagacgccaggcaggataaaggaggttgatccttagaagagattcctgggaacatatgc 219

                         
Query: 305 ttagagtatataag 318
           ||||||||||||||
Sbjct: 218 ttagagtatataag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)