BAC Information

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BAC

Clone NameMSMg01-311O13
Chromosome16 (Build37)
Map Location 8,577,420 - 8,577,657
singlet/doubletsinglet
Overlap geneAbat
Upstream gene4930511J11Rik, BC024814
Downstream geneLOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311O13.T7 (MSMg01no311_o13.b1)MSMg01-311O13.TJ (MSMg01no311_o13.g1)
ACCAG434273AG434274
length721726
length of high quality
(start - end)		239 (126 - 364)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no311_o13.b1 PHD_FILE: MSMg01no311_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:53 2005CHROMAT_FILE: MSMg01no311_o13.g1 PHD_FILE: MSMg01no311_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGGGTTCACGGAACCTCCTGCTTCAGCTTCCCTGATGTCTTGA
ACTAGACGCATGGCCTTTTACCCAGCTCCCCTCTTGGAGTACTCCTGGAA
ATGGGTGCACATTGTATCTTGTGCTCAGATGTAAGGATGTCTCTGAGCAT
CCTGCAGTGTTTGATAGCAAAGGATCACCAGCCAACATGTCAGCAGTGCC
AAAGTTGAGAGACTCCTATAAATAATAATCATATATATACATATATATGA
TTTTACTTGGACTGGCTTTGTTTTATTTTGTTTTGTTTAATTTCGTTTTT
ATGTATTTTTTTTATANCGTTGCCCCCCCCCCTGTATATCTACACACCAG
AAAAGAGNATCAAACCCCACCACAAAAAAAAAAGAATGCTAGAAATTTTA
ACTCAAGACATCTGGAAGAGCAGCCTTTGGCCTTAACCCCTTGAATTTCT
TTTCTCCGACTGTTGTGGTCTGCCTAATGTGGGTGCCAGGAACCATTTGT
GGTCCTCTGTAAAAGCAGCAAGCACTCTTAGTACCTGAGCCATCTCTCCA
ACTCCTAAAAAGAAGTCGGCTTTGGACTGGTAGGAGAGTTCACCGGGTCA
ATGTTCTTGTCTTTCAGGAGTAAAATCCTAATTTCCTTTCCTGATCCTTC
AGCGGAAAGAAATAACCTCGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCTACTTGGATTTCCTAAAA
ATGTCTTTTAACAGACAAACAAACAACTAGGGGTCTGTGCTGGCTAGATT
TATGTCAACTAGGCACAAACCACAGCCAGTCATCTGAGAGGAAGAAATCT
CAACTGAGAAAATGCATGCATAAGATCGGGCTGTGGGCCAGCCTGTAGAG
CATTTTCTTAATTAGTGATTGACGGGAGAGGGCCCAGTTCTTTGTGGGTG
GGGCCGTCCCTGGGTTGGTGGTTGTAGGTTCTATAAGAAAGCAGGCAAAG
CGTGGAGCACGCTATTTTTTTTCCCCCGCCCCGCCCTTCTGCATCAGCTC
CTGCCTCCACATTCCTACCCCCACCGCTTTTGAAGAAGAACAGAGATATG
GAGCTGCTAGCAAAATAAACCCTTGTCTCCCCAAGTTACCTTTTGGTTAG
GTGCTTCACTGCTGCAGGAGGTAAGCCTACAGCAGGGCCTTAGGATGCAT
CTTTACTTTGTGTTGATTTGGTTTTATGGGTGCTGAGGAGCCAGTGTAGT
CTCCTGTATTCTATTGCAATCCCCCCCCATTGAAATGCCTCCCCTAGCCT
CATCTCCCCCCTTTTTCTTGTTTGCTTGTCGCCCTGTTTGCTCACCGCCC
ATAGCTAGCTCTGCCTAAAATACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_o13.b1 MSMg01no311_o13.b1 CHROMAT_FILE:
MSMg01no311_o13.b1 PHD_FILE: MSMg01no311_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:53 2005
         (239 letters)



>mm_chr16_8577220_8577858
          Length = 639

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccctcttggagtactcctggaaatgggtgcacattgtatcttgtgctcagatgtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccctcttggagtactcctggaaatgggtgcacattgtatcttgtgctcagatgtaag 260

                                                                       
Query: 61  gatgtctctgagcatcctgcagtgtttgatagcaaaggatcaccagccaacatgtcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtctctgagcatcctgcagtgtttgatagcaaaggatcaccagccaacatgtcagca 320

                                                                       
Query: 121 gtgccaaagttgagagactcctataaataataatcatatatatacatatatatgatttta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtgccaaagttgagagactcctataaataataatcatatatataaatatatatgatttta 380

                                                                     
Query: 181 cttggactggctttgttttattttgttttgtttaatttcgtttttatgtatttttttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggactggctttgttttattttgttttgtttaatttcgtttttatgtatttttttt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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