Query= MSMg01no315_l03.b1 MSMg01no315_l03.b1 CHROMAT_FILE:
MSMg01no315_l03.b1 PHD_FILE: MSMg01no315_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:15 2005
(679 letters)
>mm_chr16_77446232_77447310
Length = 1079
Score = 1205 bits (623), Expect = 0.0
Identities = 663/677 (97%), Gaps = 6/677 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtacctaaaaacatgcatttctagtgtctcgtagcaacaaaagcctgacattt 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtacctaaaaa-atgcatttctagtgtctcgtagcaacaaaagcctgacattc 263
Query: 65 ggggcatagacacaaaagggaagtgagaaccatatacttgcatatttacattcatagcag 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ggggcatagacacaaaagggaagtgagaaccatatacttgcacatttacattcatagcag 323
Query: 125 cattatttacaataattccctagaaagaaaaaaatcccaaatgatcactgaggaaaaaag 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 cattatttacaataattccctagaaagaaaaaa-tcccaaatgatcactgaggaaaaaag 382
Query: 185 gtggtatatatata--cttgaatattattcagccttaaataagagtgaatgtcctgttaa 242
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtggtatatatatatacttgaatattattcagccttaaataagagtgaatgtcctgttaa 442
Query: 243 cattcttcatatgaaggatccttgctcacataatgctattaaaaaaaagccagaaacagg 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 cattcttcatatgaaggatccttgctcgcataatgctattaaaaaaaagccagaaacagg 502
Query: 303 aagagaaatattgtaatagtatcaccgtctggggtcaatagaataggcaaatggataaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagagaaatattgtaatagtatcaccgtctggggtcaatagaataggcaaatggataaag 562
Query: 363 aaaaatacca-tggcttacgggtactgaggtagaaggaagggacagatgagacctgtggt 421
|||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaataccaatg-cttatggttactgaggtagaaggaagggacagatgagacctgtggt 621
Query: 422 tttaataatgcagcttttcagtggagatggtgtagaaatcctagacctgggtgtggtaat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttaataatgcagcttttcagtggagatggtgtagaaatcctagacctgggtgtggtaat 681
Query: 482 caacaaacagcaatgtaaatggaactgttccactgaaatatgtatttaaggcaactacga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caacaaacagcaatgtaaatggaactgttccactgaaatatgtatttaaggcaactacga 741
Query: 542 agatctattctataatgttttatatatatcatttataagatcccagtgctcctccttatg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agatctattctataatgttttatatatatcatttataagatcccagtgctcctccttatg 801
Query: 602 gacctgtttatcgtggggatcactaaagaacttgagacacctgttgatcacccccaatgc 661
||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 802 gacctgtttatcgtggggatctctaaagaacttgagacacctgttaatctcccccaatgc 861
Query: 662 atagaaacgcacaaatc 678
|||||||||||||||||
Sbjct: 862 atagaaacgcacaaatc 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_l03.g1 MSMg01no315_l03.g1 CHROMAT_FILE:
MSMg01no315_l03.g1 PHD_FILE: MSMg01no315_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:15 2005
(648 letters)
>mm_chr16_77609608_77610655
Length = 1048
Score = 1116 bits (577), Expect = 0.0
Identities = 631/649 (97%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 1 attcactaaaaatgagattcactatatgtgaacactgatgagaatatatctgcctggtag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 848 attcactaaaaatgagattcactatatgtgaacactgatgagaatatatctgtctggtag 789
Query: 61 gtgacactgaacatctccagatctaggaataccagcccaagtctacaaacacaagacggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 788 gtgacactgaacatctccagatctaggaataccagcccaagtctacaaacacaagccggg 729
Query: 121 actggaagccggggatagtgcagaggaaagtcacctggtaacttgcagagctgtatgaaa 180
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 728 actggaagccggggatagtgcagaagaaagtcacctgggaacttgcagagctgtatgaaa 669
Query: 181 aacaggaaagcattgggctgcagttggaatggtgaggaagggtgaaacaggctgtgaaat 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aacaggaaagcattgggctacagttggaatggtgaggaagggtgaaacaggctgtgaaat 609
Query: 241 gcccagaaggtatgatgtctcaagaggagggcacacagaggtagcacaggttatgtgtac 300
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcctagaatgtatgatgtctcaagaggagggcacacagaggtagcacaggttatgtgtac 549
Query: 301 aagactgctcttgctagggcaatggatcactaccaaagcagcaattccaaagcgtcagca 360
||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct: 548 aagactgctcttgctagggcaatggatcactaccaaaccagcaattctaaagtgtcagca 489
Query: 361 gcagaacgtgtgcaaaactactgaatccttatgtttactgagaa-ttgaacagagtttgc 419
|||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 488 gcagaatgtgtgcaaaactactgaacccttatgtttactga-aagttgaacagagtttgc 430
Query: 420 ctttcataaaatttccttaaagagcttacaaaaggatgttgctagagccagaccagaagc 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 429 ctttcataaaatttccttaaagagcttacaaaaggatgttggtagagccagaccaaaagc 370
Query: 480 tatttaaactatcatgaaagttatcatacagtgtagctttatcattacaattttttatcc 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatttaaactatcatggaagttatcatacagtgtagctttatcattacaattttttatcc 310
Query: 540 actaaagttcatgatgatgttacaagctactttggatttactagctataattccctacct 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 309 actaaagttcatgatgatgttacaagctactttggatttactagctataatttcctacct 250
Query: 600 attgagtcatatagagcattgactttatagtcctcacacttaagggaga 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgagtcatatagagcattgactttatagtcctcacacttaagggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
