BAC Information

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BAC

Clone NameMSMg01-319C16
Chromosome16 (Build37)
Map Location 81,046,355 - 81,046,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C16.T7 (MSMg01no319_c16.b1)MSMg01-319C16.TJ (MSMg01no319_c16.g1)
ACCAG438765AG438766
length719720
length of high quality
(start - end)
287 (433 - 719)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no319_c16.b1 PHD_FILE: MSMg01no319_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:28 2005CHROMAT_FILE: MSMg01no319_c16.g1 PHD_FILE: MSMg01no319_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAACTTTCCAGAAACTTGAAAGAAAACAATTCAAGATTCTTGTCCTCT
CAGATCCTTCAATTGCACCCTCATACTTGGAATGCATTGTCATGCTCTCC
CTGGGTGTAGAAGATAGGAGTGAGTTTTCTGCACATTATTCATTACAACA
GGTTATAGTTGTTTATTTTTATGCCTTTACGAAGCCACATATAGGTTGTG
CTTGTGAATGGACAACTTACTCATGTGTCTCTTCTTAATTCTTGGGGTAT
ACAAATTGTCTGATCCTCTGAAAAAAAGTTGCATATTACATTTGACTTTA
GTCAGCCTCATTTTTTGCCTCCTCTCTCACCGATTCCACCACTCACTGCT
AGAGAAGTAAACACCCCCCACGCATTACATATCATCTTTAGACATACAAC
CACAATCTGCCTCCAAATGACAGTAGTGCAGAAATGGCATAAGTGCTATG
GGAACAACCAACCCCGTTTTTGTTGGATCTAAGGCTCACTCCATATGATA
GAAACCATACCTGATATTACTAAAGTAAGCAGGACCTAACATCAGTCATG
AGTCTAAGGGTACCTACTCCTATTATTTTGATTTAAAAAAAATCATAGGA
ATAAAATGACTCCTAATGACATATTGTCTTATTTCAATGGGTTTCACTTA
GTGCCTGCCTCGTCCCTCA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAATAGATTAATAGTGGATCTTTTATA
TTTAATTAAACACTTTTGCTCTCAATTCATAATTAAACACTTTCAAACTG
ATGATATTAATGATGAGATATACAGTTTTCTTCCTGGCTTGTAAGGAATA
ATCATGAAATATCAACATAATCACTAAATAAATCACTCATTGACTTAAAC
CCAATGACATTACTGATGTATTGAAAAATACAAGGACTCCATAAGAGGAT
AAGAAAATAATACATTTAAATGTAAACTATCATTTCTGGATGCAGTGAAG
TAAATCAAGATTTATTTCAGAACGACTCCACAAAAATATGGTATCAAAAT
CTATAATGAAATATACCCCCCGCGCAGGAAGATAACAAACACATCCTAGC
ATCATATTACAAGTTACTATTCCTTTCATTATTAGGCTATGGGTGAATTT
AATATAGTGGCACTCAAATCAAGTAAGATAATTAAAATTTTGTCAAGTTC
TTCATTGTGAAAAAAAAAAACATACATTCCTAGTCTCCTAGATAATGTGA
CTCATTGCTGAAACACACAGTTAAGGCTGAAGGAAAGGGAATTTAAAACT
CTGAAAGGATAATTTGGATAAATGTGAACACACCTGCCATGTATGTTGTG
ACAAGCATTTTTCTGTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c16.g1 MSMg01no319_c16.g1 CHROMAT_FILE:
MSMg01no319_c16.g1 PHD_FILE: MSMg01no319_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:28 2005
         (292 letters)



>mm_chr16_81046155_81046846
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatagattaatagtggatcttttatatttaattaaacacttttgctctcaattcata 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 201 tttaatagattaatagtggatcttttatatttaattaaacactttggctttaaattcata 260

                                                                       
Query: 61  attaaacactttcaaactgatgatattaatgatgagatatacagttttcttcctggcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaacactttcaaactgatgatattaatgatgagatatacagttttcttcctggcttg 320

                                                                       
Query: 121 taaggaataatcatgaaatatcaacataatcactaaataaatcactcattgacttaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaggaataatcatgaaatatcaacataatcactaaataaatcactcattgacttaaacc 380

                                                                       
Query: 181 caatgacattactgatgtattgaaaaatacaaggactccataagaggataagaaaataat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataacattactgatgtattgaaaaatacaaggactccataagaggataagaaaataat 440

                                                              
Query: 241 acatttaaatgtaaactatcatttctggatgcagtgaagtaaatcaagatt 291
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 acatttaaatgtaaactatcatttctggatgcagtgatgtaaatcaagatt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)