BAC Information

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BAC

Clone NameMSMg01-319K16
Chromosome16 (Build37)
Map Location 90,484,815 - 90,485,138
singlet/doubletsinglet
Overlap geneHunk
Upstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319K16.T7 (MSMg01no319_k16.b1)MSMg01-319K16.TJ (MSMg01no319_k16.g1)
ACCAG439121
length706716
length of high quality
(start - end)
---324 (77 - 400)
definitionCHROMAT_FILE: MSMg01no319_k16.b1 PHD_FILE: MSMg01no319_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:02 2005CHROMAT_FILE: MSMg01no319_k16.g1 PHD_FILE: MSMg01no319_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXX
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGACCAAACTAGGAGAGCTGTT
TGTTCATCCGGTGACTCCCTCAACCCAACGAGAAAGTGCTGAGACCAGCC
CCGTACAACAGAACGCTGCCTTAGAGAGAATGGGGACCGAGCAGCAGACG
TCTGAGAAAGGCAAGGGTCCTGGGGACCTGGCCATACCTCCATATTTGAA
GACACACAGGCACTGACTGGGCAAAGAAAGTGAGGAGAAGATCCAGGTAG
AATGAACAGGGTAGGCAGTGACTATAATGAACCTCCTAGCCCTGGGGAAG
TGGACACAAAGCAAGAGATTGACTGCGTTTCTACTGGGTGTGAGGCCAAG
CCATGGGGCCAAGGTATTTCAACCGANCCCCACATAGGTGGCCATGTCTT
GGAGCCTCCAAAGGCATTAAGAAGGATAGGGACAAGCCCACTCTGGCTAC
TGTGTGGAGAAAAGAATGCCGAGTAGCTATGAGGTGACCAGAAGGATATG
TCCGAGCCTCCTCGAGTAAAAGGGCGGAGGCTGGGAGTTGGTGGAATATG
TACACAAGAGCGCATATGGTTTTCTTTTTCTCTCTCTCTTCTCCTCACAC
CCCCTGAACCAATTATTTTTTTGTTTCTCCCTTTCTTTCTCTTTAAATTC
ATCCGATATTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_k16.g1 MSMg01no319_k16.g1 CHROMAT_FILE:
MSMg01no319_k16.g1 PHD_FILE: MSMg01no319_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:03 2005
         (324 letters)



>mm_chr16_90484615_90485338
          Length = 724

 Score =  572 bits (296), Expect = e-168
 Identities = 317/324 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaccaaactaggagagctgtttgttcatccggtgactccctcaacccaacgagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 524 atggaccaaactaggagagctgtttgttcatccggtgactccctcaaacaaacgagaaag 465

                                                                       
Query: 61  tgctgagaccagccccgtacaacagaacgctgccttagagagaatggggaccgagcagca 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 464 tgctgagaccagccccgtacaacagaacgcagccttagagagaatggggaccgagcagca 405

                                                                       
Query: 121 gacgtctgagaaaggcaagggtcctggggacctggccatacctccatatttgaagacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gacgtctgagaaaggcaagggtcctggggacctggccatacctccatatttgaagacaca 345

                                                                       
Query: 181 caggcactgactgggcaaagaaagtgaggagaagatccaggtagaatgaacagggtaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caggcactgactgggcaaagaaagtgaggagaagatccaggtagaatgaacagggtaggc 285

                                                                       
Query: 241 agtgactataatgaacctcctagccctggggaagtggacacaaagcaagagattgactgc 300
           |||||| | |||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 284 agtgacgaaaatgaacctcctagccctggggaagtggacacaaagcaagagaaagactgc 225

                                   
Query: 301 gtttctactgggtgtgaggccaag 324
           ||||||||||||||||||||||||
Sbjct: 224 gtttctactgggtgtgaggccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)