BAC Information

Click to search

BAC

Clone NameMSMg01-320P19
Chromosome16 (Build37)
Map Location 7,040,839 - 7,041,071
singlet/doubletsinglet
Overlap geneA2bp1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320P19.T7 (MSMg01no320_p19.b1)MSMg01-320P19.TJ (MSMg01no320_p19.g1)
ACCAG440078AG440079
length737738
length of high quality
(start - end)
236 (124 - 359)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no320_p19.b1 PHD_FILE: MSMg01no320_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:37 2005CHROMAT_FILE: MSMg01no320_p19.g1 PHD_FILE: MSMg01no320_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGTTGCCTTCTCACAGGTTTAACCCTAGAAGGGCAGTTATGGT
TTGACATATGCACTTTGAACCTCGGTGAGACGCAGTAAGGGATGAAGGAG
AGGAGAGAAGACAGGTAGGAAAGAGGAAAGGTTGGTAGGATGTAGGACAG
GAAAGGTGATAGACAGATAGGTCAATAGATATAGATAGACAGACAGACAG
ACATCGATGATAGTCAGGGACAGACTACGTACAGTGCATACACACAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAT
AGGAGAGGAATATTTGTAGACAGCACGGCGAGTGGAGAAAACCAAGGGAG
AGAAACTTTTCAATAGAAACAAAAAGTACTTTATGATCCTATACATTAGT
CCATGCCATTAATTATTAATGTCACTGATGAGAAGAAATTAGAACCTCCC
TAGCTTTCTACATCTCTGTGTGCCCTATATAATTTACTGTAAACAGAATG
ATCCTTCAAAGACATGTTGTCCATGGAGTTAAAGCCTGACAATGGCCTGT
TTAGAAAATTAAAATCTTTACTCTGTTTATAGATGTTTTTTAAACCTTGA
GTCTCAAAATAAGGTTCTCTGAGCCATCTTGTTCCTGTCAAGGAAAAACC
ATCTCATCTTTTCTGGGCATCTTTCGTTAGTTGTGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGAAAGGCAGGCAAAAGGATTA
CCCCAGTGAGAACTTCACAGGACACGACACAGGCCCTTGGGAGTCAGATC
TTGGATTCTCAGCAGCAGACAAAACCCAGCTAATCTTGTCACCTCACAGC
CACAGACCCCGCCCCATGACACAGCTGGCCTGCCTCCCCGAAGGGCAGTG
CTAGACAGTTTCCAAAGCCCAGGGGTAGTGAGTTAGGCAGATGCCTTTCT
AGTAAGAGGCAAGGAGACCCAATGAAGCCTAGAGCAGATACACAGAGCAA
GAACCGGATTCTTATAGTCGCACCCACCCCCCCGATTGGGAATGTAGCCA
ACAGACGTGCCTAGTGAGACCACTGACAAAAAGAAAACAGGTTTGGGGTG
CAGAAACAAGGAGAAAGGCAAACAAAACCATGGCCAGTCAAGACAACCTC
TGACCGTGTTCACCCAATGGTGGGGAGTTTCTTTTTTTTTTAAACAGGGG
GTATCAAGCTCCAGAAATCCCAATTTTCTGATTCTTATGGACTGACTAGA
TGGATAGATAAGCACAGACAAACTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCACTCTCACTCTGTTTCAATCATTAAAACAGCTGAA
TTACAAGTATAAGCATCTAGATGTCTTCGCAGAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_p19.g1 MSMg01no320_p19.g1 CHROMAT_FILE:
MSMg01no320_p19.g1 PHD_FILE: MSMg01no320_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:38 2005
         (234 letters)



>mm_chr16_7040639_7041272
          Length = 634

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaggcccttgggagtcagatcttggattctcagcagcagacaaaacccagctaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acacaggcccttgggagtcagatcttggattctcagcagcagacaaaacccagctaatct 374

                                                                       
Query: 61  tgtcacctcacagccacagaccccgccccatgacacagctggcctgcctccccgaagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtcacctcacagccacagaccccgccccatgacacagctggcctgcctccccgaagggc 314

                                                                       
Query: 121 agtgctagacagtttccaaagcccaggggtagtgagttaggcagatgcctttctagtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtgctagacagtttccaaagcccaggggtagtgagttaggcagatgcctttctagtaag 254

                                                                
Query: 181 aggcaaggagacccaatgaagcctagagcagatacacagagcaagaaccggat 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aggcaaggagacccaatgaagcctagagcagatacacagagcaagaaccggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)